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Dohm Juliane

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** = Publikationen gelistet in SCI/SSCI (veröffentlicht im Web of Science)
* = Publikationen in sonstigen peer-reviewten Journalen (ggf. noch nicht im WoS veröffentlicht)
Filter: Originalarbeit, Übersichtsarbeit, Konferenzband Originalarbeit

= Open Access - Publikationen

 

2023

Originalbeitrag in Fachzeitschrift

** Favreau, E; Cini, A; Taylor, D; Câmara Ferreira, F; Bentley, MA; Cappa, F; Cervo, R; Privman, E; Schneider, J; Thiéry, D; Mashoodh, R; Wyatt, CDR; Brown, RL; Bodrug-Schepers, A; Stralis-Pavese, N; Dohm, JC; Mead, D; Himmelbauer, H; Guigo, R; Sumner, S; Putting hornets on the genomic map..

Sci Rep. 2023; 13(1):6232 WoS PubMed FullText FullText_BOKU

** Felkel, S; Dohm, JC; Himmelbauer, H Genomic variation in the genus Beta based on 656 sequenced beet genomes.

SCI REP-UK. 2023; 13(1): WoS PubMed FullText FullText_BOKU

** Felkel, S; Tremetsberger, K; Moser, D; Dohm, JC; Himmelbauer, H; Winkler, M; Genome-environment associations along elevation gradients in two snowbed species of the North-Eastern Calcareous Alps..

BMC Plant Biol. 2023; 23(1):203 WoS PubMed FullText FullText_BOKU

2022

** Andolfo, G; Dohm, JC; Himmelbauer, H Prediction of NB-LRR resistance genes based on full-length sequence homology.

PLANT J. 2022; 110(6): 1592-1602. WoS PubMed FullText FullText_BOKU

** Heistinger, L; Dohm, JC; Paes, BG; Koizar, D; Troyer, C; Ata, O; Steininger-Mairinger, T; Mattanovich, D Genotypic and phenotypic diversity among Komagataella species reveals a hidden pathway for xylose utilization.

MICROB CELL FACT. 2022; 21(1), 70 WoS PubMed FullText FullText_BOKU

** Koorakula, R; Ghanbari, M; Schiavinato, M; Wegl, G; Dohm, JC; Domig, KJ; Storage media and RNA extraction approaches substantially influence the recovery and integrity of livestock fecal microbial RNA..

PeerJ. 2022; 10:e13547 WoS PubMed FullText FullText_BOKU

** Wascher, FL; Stralis-Pavese, N; McGrath, JM; Schulz, B; Himmelbauer, H; Dohm, JC Genomic distances reveal relationships of wild and cultivated beets.

NAT COMMUN. 2022; 13(1), 2021 WoS PubMed FullText FullText_BOKU

* Koorakula, R; Schiavinato, M; Ghanbari, M; Wegl, G; Grabner, N; Koestelbauer, A; Klose, V; Dohm, JC; Domig, KJ; (2022): Metatranscriptomic Analysis of the Chicken Gut Resistome Response to In-Feed Antibiotics and Natural Feed Additives..

Front Microbiol. 2022; 13:833790 PubMed FullText FullText_BOKU

PUBLIZIERTER Beitrag für wissenschaftliche Veranstaltung

Blazek, L; Dohm, JC; Himmelbauer, H (2022): Evolutionary dynamics of the repeat landscape in sugar beet and its wild relatives. [Poster]
[200 years Gregor Mendel: of peas, cows and people 2022, Vienna, Austria, 11.03.2022]

In: BOKU, Science to Public Mini Symposium FullText

Holzweber T; Dohm, JC; Gruber KR; Himmelbauer H (2022): Long-read assemblies of sugar beet and sea beet. [Poster]
[2nd Beet Resources Conference 2022, Vienna, Austria, 06.10.2022 - 07.10.2022]

In: BeetConf2022, Book of Abstracts

Schönmann, L; Himmelbauer, H; Dohm, JC (2022): Haplotype divergence of flowering time regulator genes in sugar beet and wild beets.
[2nd Beet Resources Conference 2022, Vienna, Austria, 06.10.2022 - 07.10.2022]

In: BeetConf2022, Book of Abstracts

Wascher, FL; Himmelbauer, H; Dohm, JC (2022): What we can learn from Beta re-sequencing data.
[2nd Beet Resources Conference 2022, Vienna, Austria, 06.10.2022 - 07.10.2022]

In: BeetConf2022, Book of Abstracts

Wascher, FL; Himmelbauer, H; Dohm, JC (2022): Genetic diversity in Amaranthaceae crops. [Poster]
[21st European Conference on Computational Biology ECCB 2022, Sitges, Spain, 18.09.2022 - 21.09.2022]

In: ECCB2022, Book of Abstracts FullText

Wascher, FL; Nancy Stralis-Pavese, N; Himmelbauer, H; Dohm, JC (2022): K-mer based phylogeny of wild and cultivated beets. [Poster]
[200 years Gregor Mendel: of peas, cows and people 2022, Vienna, Austria, 11.03.2022]

In: BOKU, Science to Public Mini Symposium FullText

2021

Originalbeitrag in Fachzeitschrift

** Bodrug-Schepers, A; Stralis-Pavese, N; Buerstmayr, H; Dohm, JC; Himmelbauer, H; Quinoa genome assembly employing genomic variation for guided scaffolding..

Theor Appl Genet. 2021; 134(11):3577-3594 WoS PubMed FullText FullText_BOKU

** Lehner, R; Blazek, L; Minoche, AE; Dohm, JC; Himmelbauer, H; Assembly and characterization of the genome of chard (Beta vulgaris ssp. vulgaris var. cicla)..

J Biotechnol. 2021; 333:-76 WoS PubMed FullText FullText_BOKU

** Schiavinato, M; Bodrug-Schepers, A; Dohm, JC; Himmelbauer, H; Subgenome evolution in allotetraploid plants..

Plant J. 2021; 106(3):672-688 WoS PubMed FullText FullText_BOKU

** Schuller, A; Cserjan-Puschmann, M; Köppl, C; Grabherr, R; Wagenknecht, M; Schiavinato, M; Dohm, JC; Himmelbauer, H; Striedner, G; Adaptive Evolution in Producing Microtiter Cultivations Generates Genetically Stable Escherichia coli Production Hosts for Continuous Bioprocessing..

Biotechnol J. 2021; 16(3):e2000376 WoS PubMed FullText FullText_BOKU

PUBLIZIERTER Beitrag für wissenschaftliche Veranstaltung

Blazek, L; Dohm, JC; Himmelbauer, H (2021): Comparison of wild and cultivated beets regarding repeats and transposon insertion polymorphisms. [Poster]
[German Conference on Bioinformatics 2021, Online, 06.09.2021 - 09.09.2021]

In: Fachgruppe Bioinformatik, Conference proceedings German Conference on Bioinformatics (GCB) 2021 FullText

Felkel, S; Stralis-Pavese, N; Schulz, B; Dohm, JC; Himmelbauer, H (2021): Analysis of sugar beet and wild beet genomes to study relationships, origins, population dynamics and selection. [Poster]
[German Conference on Bioinformatics 2021, Online, 06.09.2021 - 09.09.2021]

In: Fachgruppe Bioinformatik, Conference proceedings German Conference on Bioinformatics (GCB) 2021 FullText

Gomez Paes, B; Heistinger, L; Koizar, D; Mairinger, T; Ata-Akyol, Ö; Dohm, J; Troyer, C; Mattanovich, D (2021): Xylose metabolism in Komagataella phaffii (Pichia pastoris). [Poster]
[ICY15 meets ICYGMB30, Online, 23.08.2021 - 27.08.2021]

In: ICY (Ed.), ICY15 meets ICYGMB30

Wascher, F; Stralis-Pavese, N; Schulz, B; Himmelbauer, H; Dohm, JC (2021): K-mer-based phylogeny of wild and cultivated beets. [Poster]
[German Conference on Bioinformatics 2021, Online, 06.09.2021 - 09.09.2021]

In: Fachgruppe Bioinformatik, Conference proceedings German Conference on Bioinformatics (GCB) 2021 FullText

2020

Originalbeitrag in Fachzeitschrift

** Schiavinato, M; Marcet-Houben, M; Dohm, JC; Gabaldón, T; Himmelbauer, H; Parental origin of the allotetraploid tobacco Nicotiana benthamiana..

Plant J. 2020; 102(3):541-554 WoS PubMed FullText FullText_BOKU

** Zwickl, NF; Stralis-Pavese, N; Schäffer, C; Dohm, JC; Himmelbauer, H; Comparative genome characterization of the periodontal pathogen Tannerella forsythia..

BMC Genomics. 2020; 21(1):150 WoS PubMed FullText FullText_BOKU

* Dohm, JC; Peters, P; Stralis-Pavese, N; Himmelbauer, H; (2020): Benchmarking of long-read correction methods..

NAR Genom Bioinform. 2020; 2(2):lqaa037 PubMed FullText FullText_BOKU

PUBLIZIERTER Beitrag für wissenschaftliche Veranstaltung

Blazek, B; Dohm, JC; Himmelbauer, H (2020): Evolutionary dynamics of the repeat landscape in sugar beet and its wild relatives. [Poster]
["Digital Breeding". Internationales Symposium der Gesellschaft für Pflanzenzüchtung e.V. (GPZ), Tulln an der Donau, Austria, 11.02.2020 - 13.02.2020]

In: Gesellschaft für Pflanzenzüchtung e.V. (GPZ), Digital Breeding - Book of Abstracts FullText

Himmelbauer, H; Bodrug, A; Wascher, FL; Stralis-Pavese, N; Bürstmayr, H; Dohm, JC (2020): Quinoa sequencing and detection of haplotype blocks for genome scaffolding. [Poster]
["Digital Breeding". Internationales Symposium der Gesellschaft für Pflanzenzüchtung e.V. (GPZ), Tulln an der Donau, Austria, 11.02.2020 - 13.02.2020]

In: Gesellschaft für Pflanzenzüchtung e.V. (GPZ), Digital Breeding - Book of Abstracts FullText

Schiavinato, M; Bodrug, A; Marcet-Houben, M; Gabaldón, T; Dohm, JC; Himmelbauer, H (2020): Analysis of subgenome structure and evolution in allopolyploid plants.
["Digital Breeding". Internationales Symposium der Gesellschaft für Pflanzenzüchtung e.V. (GPZ), Tulln an der Donau, Austria, 11.02.2020 - 13.02.2020]

In: Gesellschaft für Pflanzenzüchtung e.V. (GPZ), Digital Breeding - Book of Abstracts FullText

Wascher, FL; Felkel, S; Stralis-Pavese, N; Schulz, B; Dohm, JC; Himmelbauer, H (2020): Population analysis of sugar beet and wild beets. [Poster]
["Digital Breeding". Internationales Symposium der Gesellschaft für Pflanzenzüchtung e.V. (GPZ), Tulln an der Donau, Austria, 11.02.2020 - 13.02.2020]

In: Gesellschaft für Pflanzenzüchtung e.V. (GPZ), Digital Breeding - Book of Abstracts FullText

2019

Originalbeitrag in Fachzeitschrift

** Rodríguez Del Río, Á; Minoche, AE; Zwickl, NF; Friedrich, A; Liedtke, S; Schmidt, T; Himmelbauer, H; Dohm, JC; Genomes of the wild beets Beta patula and Beta vulgaris ssp. maritima..

Plant J. 2019; 99(6):1242-1253 WoS PubMed FullText FullText_BOKU

** Schiavinato, M; Strasser, R; Mach, L; Dohm, JC; Himmelbauer, H Genome and transcriptome characterization of the glycoengineered Nicotiana benthamiana line Delta XT/FT.

BMC GENOMICS. 2019; 20, 594 WoS PubMed FullText FullText_BOKU

PUBLIZIERTER Beitrag für wissenschaftliche Veranstaltung

Schiavinato, M; Marcet-Houben, M; Dohm, JC; Gabaldón, T; Himmelbauer, H (2019): Plant Speed Dating.
[12th European Conference on Python in Science, Bilbao, Spain, 02.09.2019 - 06.09.2019]

In: EuroSciPy, Abstract book

2018

Originalbeitrag in Fachzeitschrift

** Tomek, MB; Maresch, D; Windwarder, M; Friedrich, V; Janesch, B; Fuchs, K; Neumann, L; Nimeth, I; Zwickl, NF; Dohm, JC; Everest-Dass, A; Kolarich, D; Himmelbauer, H; Altmann, F; Schaffer, C A General Protein O-Glycosylation Gene Cluster Encodes the Species-Specific Glycan of the Oral Pathogen Tannerella forsythia: O-Glycan Biosynthesis and Immunological Implications.

FRONT MICROBIOL. 2018; 9: WoS FullText FullText_BOKU

* Tomek, MB; Maresch, D; Windwarder, M; Friedrich, V; Janesch, B; Fuchs, K; Neumann, L; Nimeth, I; Zwickl, NF; Dohm, JC; Everest-Dass, A; Kolarich, D; Himmelbauer, H; Altmann, F; Schäffer, C; (2018): A General Protein .

Front Microbiol. 2018; 9:2008 PubMed FullText FullText_BOKU

PUBLIZIERTER Beitrag für wissenschaftliche Veranstaltung

Bodrug, A; Bürstmayr, H; Stralis Pavese, N; Dohm, JC; Himmelbauer, H (2018): Detection of haplotype blocks for genome scaffolding in plants. [Poster]
[German Conference on Bioinformatics 2018, Vienna, Austria, 25.09.2018 - 28.09.2018]

In: Fachgruppe Bioinformatik, Conference proceedings German Conference on Bioinformatics (GCB) 2018 FullText

McCann, J; Wascher, F; Stralis Pavese, N; Schulz, B; Dohm, JC; Himmelbauer, H (2018): Population structure and allele frequency clines in wild and cultivated beets (Beta vulgaris). [Poster]
[German Conference on Bioinformatics 2018, Vienna, Austria, 25.09.2018 - 28.09.2018]

In: Fachgruppe Bioinformatik, Conference proceedings German Conference on Bioinformatics (GCB) 2018 FullText

Peters, P; Stralis Pavese, N; Himmelbauer, H; Dohm, JC (2018): Benchmarking the impact of long-read correction methods. [Poster]
[German Conference on Bioinformatics 2018, Vienna, Austria, 25.09.2018 - 28.09.2018]

In: Fachgruppe Bioinformatik, Conference proceedings German Conference on Bioinformatics (GCB) 2018 FullText

Schiavinato, M; Dohm, JC; Gabaldón, T; Himmelbauer, H (2018): A strategy for subgenome separation in Nicotiana benthamiana. [Poster]
[XIV Symposium on Bioinformatics (JBI 2018), Granada, Spain, 14.11.2018 - 16.11.2018]

In: Jornadas de Bioinformática, Abstract booklet FullText

Zwickl, NF; Stralis Pavese, N; Schäffer, C; Himmelbauer, H; Dohm, JC (2018): Comparative genomics of the pathogenic bacterium Tannerella forsythia. [Poster]
[German Conference on Bioinformatics 2018, Vienna, Austria, 25.09.2018 - 28.09.2018]

In: Fachgruppe Bioinformatik, Conference proceedings German Conference on Bioinformatics (GCB) 2018 FullText

2017

Originalbeitrag in Fachzeitschrift

** Capistrano-Gossmann, GG; Ries, D; Holtgräwe, D; Minoche, A; Kraft, T; Frerichmann, SLM; Rosleff Soerensen, T; Dohm, JC; González, I; Schilhabel, M; Varrelmann, M; Tschoep, H; Uphoff, H; Schütze, K; Borchardt, D; Toerjek, O; Mechelke, W; Lein, JC; Schechert, AW; Frese, L; Himmelbauer, H; Weisshaar, B; Kopisch-Obuch, FJ; Crop wild relative populations of Beta vulgaris allow direct mapping of agronomically important genes..

Nat Commun. 2017; 8:15708 WoS PubMed FullText FullText_BOKU

PUBLIZIERTER Beitrag für wissenschaftliche Veranstaltung

Bodrug, A; Minoche, AE; Bürstmayr, H; Gomez-Pando, L; Schmidt, T; Reinhardt, R; Dohm, JC; Himmelbauer, H (2017): Assembly of tetraploid quinoa and separation into ancestral sub-genomes. [Poster]
[ALPHY 2017: Bioinformatics and Evolutionary Genomics, Lyon, France, 01.02.2017 - 03.02.2017]

In: Rencontres Alphy, Abstract book FullText

Dohm, JC; Bodrug, A; Rodríguez del Río, A; McGrath, MJ; Schulz, B; Himmelbauer, H (2017): Genome analysis of wild and cultivated beets. [Poster]
[NGS' 17: Structural variation and population genomics, Barcelona, Spain, 03.04.2017 - 05.04.2017]

In: ISMB, Conference Book FullText

Dohm, JC; Himmelbauer, H (2017): Pflanzenforschung und Pflanzenzüchtung im Zeitalter der Genomsequenzierung.
[150 Jahre Mendelsche Regeln: Vom Erbsenzählen zum Geneditieren 2016, Vienna, Austria, 17.03.2016 - 18.03.2016]

, NOVA ACTA LEOPOLDINA, 413, 209-230

Schiavinato, M; Strasser, R; Dohm, JC; Himmelbauer, H (2017): Gene prediction and gene set analysis of Nicotiana benthamiana. [Poster]
[Austrian Proteomics and Metabolomics Research Symposium APRS 2017, Graz, Austria, 06.09.2017 - 08.09.2017]

In: Austrian Proteomics & Metabolomics Association, Abstract book

2016

Originalbeitrag in Fachzeitschrift

** Harnisch, C; Cuzic-Feltens, S; Dohm, JC; Gotze, M; Himmelbauer, H; Wahle, E Oligoadenylation of 3 ' decay intermediates promotes cytoplasmic mRNA degradation in Drosophila cells.

RNA, 22, 428-442; ISSN 1355-8382 WoS PubMed FullText FullText_BOKU

** Nachshon, A; Abu-Toamih Atamni, HJ; Steuerman, Y; Sheikh-Hamed, R; Dorman, A; Mott, R; Dohm, JC; Lehrach, H; Sultan, M; Shamir, R; Sauer, S; Himmelbauer, H; Iraqi, FA; Gat-Viks, I; Dissecting the Effect of Genetic Variation on the Hepatic Expression of Drug Disposition Genes across the Collaborative Cross Mouse Strains..

Front Genet. 2016; 7:172 WoS PubMed FullText FullText_BOKU

** Schwichtenberg, K; Wenke, T; Zakrzewski, F; Seibt, KM; Minoche, A; Dohm, JC; Weisshaar, B; Himmelbauer, H; Schmidt, T Diversification, evolution and methylation of short interspersed nuclear element families in sugar beet and related Amaranthaceae species.

PLANT J. 2016; 85(2): 229-244. WoS PubMed FullText FullText_BOKU

** Vlasova, A; Capella-Gutiérrez, S; Rendón-Anaya, M; Hernández-Oñate, M; Minoche, AE; Erb, I; Câmara, F; Prieto-Barja, P; Corvelo, A; Sanseverino, W; Westergaard, G; Dohm, JC; Pappas, GJ; Saburido-Alvarez, S; Kedra, D; Gonzalez, I; Cozzuto, L; Gómez-Garrido, J; Aguilar-Morón, MA; Andreu, N; Aguilar, OM; Garcia-Mas, J; Zehnsdorf, M; Vázquez, MP; Delgado-Salinas, A; Delaye, L; Lowy, E; Mentaberry, A; Vianello-Brondani, RP; García, JL; Alioto, T; Sánchez, F; Himmelbauer, H; Santalla, M; Notredame, C; Gabaldón, T; Herrera-Estrella, A; Guigó, R; Genome and transcriptome analysis of the Mesoamerican common bean and the role of gene duplications in establishing tissue and temporal specialization of genes..

Genome Biol. 2016; 17:32 WoS PubMed FullText FullText_BOKU

PUBLIZIERTER Beitrag für wissenschaftliche Veranstaltung

Dohm, JC; Bodrug, A; McGrath, JM; Schulz, B; Himmelbauer, H (2016): Analyzing the genomes of wild and cultivated beets. [Poster]
[15th European Conference on Computational Biology (ECCB), The Hague, Netherlands, 03.09.2016 - 07.09.2016]

In: ECCB, Poster list, Theme/Track: Genomes FullText

Weisshaar, B; Himmelbauer, H; Schmidt, T; Holtgräwe, D; Minoche, AE; Dohm, JC; Stracke, R; Zakrzewski, F; Parol-Kryger, R; Stadermann, KB; Schneider, J; Rosleff Sörensen, T; Kraft, T; Schulz, B (2016): Sugar Beet BeetMap-3, and Steps to Improve the Genome Assembly and Genome Sequence Annotation (W875).
[24th Plant & Animal Genome Conference 2016, San Diego, CA, USA, 09.01.2016 - 13.01.2016]

In: PAG, Abstract book FullText

2015

Originalbeitrag in Fachzeitschrift

** Minoche, AE; Dohm, JC; Schneider, J; Holtgräwe, D; Viehöver, P; Montfort, M; Rosleff Sörensen, T; Weisshaar, B; Himmelbauer, H; Exploiting single-molecule transcript sequencing for eukaryotic gene prediction..

Genome Biol. 2015; 16:184 WoS PubMed FullText FullText_BOKU

PUBLIZIERTER Beitrag für wissenschaftliche Veranstaltung

Dohm, JC; Peters, P; Minoche, AE; Postel, U; Kraft, T; Schulz, B; Schmidt, T; Weisshaar, B; Himmelbauer, H (2015): Genomics and transcriptomics of the genus Beta using short and long sequencing reads. [Poster]
[PGEV 2015: 3rd Current Opinion Conference on Plant Genome Evolution, Amsterdam, Netherlands, 06.09.2015 - 08.09.2015]

In: Elsevier conferences, Abstract book

2014

Originalbeitrag in Fachzeitschrift

* Dohm, JC; Minoche, AE; Holtgräwe, D; Capella-Gutiérrez, S; Zakrzewski, F; Tafer, H; Rupp, O; Sörensen, TR; Stracke, R; Reinhardt, R; Goesmann, A; Kraft, T; Schulz, B; Stadler, PF; Schmidt, T; Gabaldón, T; Lehrach, H; Weisshaar, B; Himmelbauer, H; (2014): The genome of the recently domesticated crop plant sugar beet (Beta vulgaris)..

Nature. 2014; 505(7484):546-549 PubMed FullText FullText_BOKU

* Heitkam, T; Holtgräwe, D; Dohm, JC; Minoche, AE; Himmelbauer, H; Weisshaar, B; Schmidt, T; (2014): Profiling of extensively diversified plant LINEs reveals distinct plant-specific subclades..

Plant J. 2014; 79(3):385-397 PubMed FullText FullText_BOKU

* Leiva-Eriksson, N; Pin, PA; Kraft, T; Dohm, JC; Minoche, AE; Himmelbauer, H; Bülow, L; (2014): Differential expression patterns of non-symbiotic hemoglobins in sugar beet (Beta vulgaris ssp. vulgaris)..

Plant Cell Physiol. 2014; 55(4):83-44 PubMed FullText FullText_BOKU

* Schmidt, M; Hense, S; Minoche, AE; Dohm, JC; Himmelbauer, H; Schmidt, T; Zakrzewski, F; (2014): Cytosine methylation of an ancient satellite family in the wild beet Beta procumbens..

Cytogenet Genome Res. 2014; 143(1-3):15-67 PubMed FullText FullText_BOKU

* Zakrzewski, F; Schubert, V; Viehoever, P; Minoche, AE; Dohm, JC; Himmelbauer, H; Weisshaar, B; Schmidt, T; (2014): The CHH motif in sugar beet satellite DNA: a modulator for cytosine methylation..

Plant J. 2014; 78(6):937-950 PubMed FullText FullText_BOKU

2013

* Llorens, F; Hummel, M; Pantano, L; Pastor, X; Vivancos, A; Castillo, E; Mattlin, H; Ferrer, A; Ingham, M; Noguera, M; Kofler, R; Dohm, JC; Pluvinet, R; Bayés, M; Himmelbauer, H; del Rio, JA; Martí, E; Sumoy, L; (2013): Microarray and deep sequencing cross-platform analysis of the mirRNome and isomiR variation in response to epidermal growth factor..

BMC Genomics. 2013; 14:371 PubMed FullText FullText_BOKU

* Weber, B; Heitkam, T; Holtgräwe, D; Weisshaar, B; Minoche, AE; Dohm, JC; Himmelbauer, H; Schmidt, T; (2013): Highly diverse chromoviruses of Beta vulgaris are classified by chromodomains and chromosomal integration..

Mob DNA. 2013; 4(1):8 PubMed FullText FullText_BOKU

2012

* Berndt, H; Harnisch, C; Rammelt, C; Stöhr, N; Zirkel, A; Dohm, JC; Himmelbauer, H; Tavanez, JP; Hüttelmaier, S; Wahle, E; (2012): Maturation of mammalian H/ACA box snoRNAs: PAPD5-dependent adenylation and PARN-dependent trimming..

RNA. 2012; 18(5):958-972 PubMed FullText FullText_BOKU

* Dohm, JC; Lange, C; Holtgräwe, D; Sörensen, TR; Borchardt, D; Schulz, B; Lehrach, H; Weisshaar, B; Himmelbauer, H; (2012): Palaeohexaploid ancestry for Caryophyllales inferred from extensive gene-based physical and genetic mapping of the sugar beet genome (Beta vulgaris)..

Plant J. 2012; 70(3):528-540 PubMed FullText FullText_BOKU

* Menzel, G; Krebs, C; Diez, M; Holtgräwe, D; Weisshaar, B; Minoche, AE; Dohm, JC; Himmelbauer, H; Schmidt, T; (2012): Survey of sugar beet (Beta vulgaris L.) hAT transposons and MITE-like hATpin derivatives..

Plant Mol Biol. 2012; 78(4-5):393-405 PubMed FullText FullText_BOKU

* Pin, PA; Zhang, W; Vogt, SH; Dally, N; Büttner, B; Schulze-Buxloh, G; Jelly, NS; Chia, TY; Mutasa-Göttgens, ES; Dohm, JC; Himmelbauer, H; Weisshaar, B; Kraus, J; Gielen, JJ; Lommel, M; Weyens, G; Wahl, B; Schechert, A; Nilsson, O; Jung, C; Kraft, T; Müller, AE; (2012): The role of a pseudo-response regulator gene in life cycle adaptation and domestication of beet..

Curr Biol. 2012; 22(12):1095-1101 PubMed FullText FullText_BOKU

* Tsend-Ayush, E; Kortschak, RD; Bernard, P; Lim, SL; Ryan, J; Rosenkranz, R; Borodina, T; Dohm, JC; Himmelbauer, H; Harley, VR; Grützner, F; (2012): Identification of mediator complex 26 (Crsp7) gametologs on platypus X1 and Y5 sex chromosomes: a candidate testis-determining gene in monotremes?.

Chromosome Res. 2012; 20(1):127-138 PubMed FullText FullText_BOKU

* Wollrab, C; Heitkam, T; Holtgräwe, D; Weisshaar, B; Minoche, AE; Dohm, JC; Himmelbauer, H; Schmidt, T; (2012): Evolutionary reshuffling in the Errantivirus lineage Elbe within the Beta vulgaris genome..

Plant J. 2012; 72(4):636-651 PubMed FullText FullText_BOKU

2011

* Llorens, F; Hummel, M; Pastor, X; Ferrer, A; Pluvinet, R; Vivancos, A; Castillo, E; Iraola, S; Mosquera, AM; González, E; Lozano, J; Ingham, M; Dohm, JC; Noguera, M; Kofler, R; del Río, JA; Bayés, M; Himmelbauer, H; Sumoy, L; (2011): Multiple platform assessment of the EGF dependent transcriptome by microarray and deep tag sequencing analysis..

BMC Genomics. 2011; 12:326 PubMed FullText FullText_BOKU

* Minoche, AE; Dohm, JC; Himmelbauer, H; (2011): Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and genome analyzer systems..

Genome Biol. 2011; 12(11):R112 PubMed FullText FullText_BOKU

* Puente, XS; Pinyol, M; Quesada, V; Conde, L; Ordóñez, GR; Villamor, N; Escaramis, G; Jares, P; Beà, S; González-Díaz, M; Bassaganyas, L; Baumann, T; Juan, M; López-Guerra, M; Colomer, D; Tubío, JM; López, C; Navarro, A; Tornador, C; Aymerich, M; Rozman, M; Hernández, JM; Puente, DA; Freije, JM; Velasco, G; Gutiérrez-Fernández, A; Costa, D; Carrió, A; Guijarro, S; Enjuanes, A; Hernández, L; Yagüe, J; Nicolás, P; Romeo-Casabona, CM; Himmelbauer, H; Castillo, E; Dohm, JC; de Sanjosé, S; Piris, MA; de Alava, E; San Miguel, J; Royo, R; Gelpí, JL; Torrents, D; Orozco, M; Pisano, DG; Valencia, A; Guigó, R; Bayés, M; Heath, S; Gut, M; Klatt, P; Marshall, J; Raine, K; Stebbings, LA; Futreal, PA; Stratton, MR; Campbell, PJ; Gut, I; López-Guillermo, A; Estivill, X; Montserrat, E; López-Otín, C; Campo, E; (2011): Whole-genome sequencing identifies recurrent mutations in chronic lymphocytic leukaemia..

Nature. 2011; 475(7354):101-105 PubMed FullText FullText_BOKU

* Zakrzewski, F; Weisshaar, B; Fuchs, J; Bannack, E; Minoche, AE; Dohm, JC; Himmelbauer, H; Schmidt, T; (2011): Epigenetic profiling of heterochromatic satellite DNA..

Chromosoma. 2011; 120(4):409-422 PubMed FullText FullText_BOKU

2010

* Lange, C; Mittermayr, L; Dohm, JC; Holtgräwe, D; Weisshaar, B; Himmelbauer, H; (2010): High-throughput identification of genetic markers using representational oligonucleotide microarray analysis..

Theor Appl Genet. 2010; 121(3):549-565 PubMed FullText FullText_BOKU

* Vivancos, AP; Güell, M; Dohm, JC; Serrano, L; Himmelbauer, H; (2010): Strand-specific deep sequencing of the transcriptome..

Genome Res. 2010; 20(7):98-99 PubMed FullText FullText_BOKU

2009

* Dohm, JC; Lange, C; Reinhardt, R; Himmelbauer, H; (2009): Haplotype divergence in Beta vulgaris and microsynteny with sequenced plant genomes..

Plant J. 2009; 57(1):14-26 PubMed FullText FullText_BOKU

2008

* Dohm, JC; Lottaz, C; Borodina, T; Himmelbauer, H; (2008): Substantial biases in ultra-short read data sets from high-throughput DNA sequencing..

Nucleic Acids Res. 2008; 36(16):e105 PubMed FullText FullText_BOKU

2007

* Dohm, JC; Lottaz, C; Borodina, T; Himmelbauer, H; (2007): SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing..

Genome Res. 2007; 17(11):169-706 PubMed FullText FullText_BOKU

* Dohm, JC; Tsend-Ayush, E; Reinhardt, R; Grützner, F; Himmelbauer, H; (2007): Disruption and pseudoautosomal localization of the major histocompatibility complex in monotremes..

Genome Biol. 2007; 8(8):R175 PubMed FullText FullText_BOKU

2006

* Dohm, JC; Vingron, M; Staub, E; (2006): Horizontal gene transfer in aminoacyl-tRNA synthetases including leucine-specific subtypes..

J Mol Evol. 2006; 63(4):43-47 PubMed FullText FullText_BOKU

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