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Pirker Katharina

Scientific publications from BOKU scientists, especially those which are published in SCI / SSCI journals, or in other refereed journals, proceedings, monographs as well as articles in collected volumes are listed under PUBLICATIONS.

Publications with special focus on transfer of knowledge ("social impact") to practitioners as well as the interested public can be found under the menu item:

>> Transfer of Knowledge


** = Publications listed in SCI/SSCI - Journals (published in Web of Science)
* = peer-reviewed publication (not listed in SCI/SSCI)
Only: Full paper/article, Review, Proceedings Paper

= Open Access - Publications

 

2016

Journal Articles

** Hofbauer, S; Howes, BD; Flego, N; Pirker, KF; Schaffner, I; Mlynek, G; Djinović-Carugo, K; Furtmüller, PG; Smulevich, G; Obinger, C; From chlorite dismutase towards HemQ - the role of the proximal H-bonding network in haeme binding..

Biosci Rep. 2016; 36(2): WoS PubMed PUBMED Central FullText FullText_BOKU

2015

** Gasselhuber, B; Carpena, X; Graf, MM; Pirker, KF; Nicolussi, A; Sündermann, A; Hofbauer, S; Zamocky, M; Furtmüller, PG; Jakopitsch, C; Oostenbrink, C; Fita, I; Obinger, C; Eukaryotic Catalase-Peroxidase: The Role of the Trp-Tyr-Met Adduct in Protein Stability, Substrate Accessibility, and Catalysis of Hydrogen Peroxide Dismutation..

Biochemistry. 2015; 54(35):5425-5438 WoS PubMed FullText FullText_BOKU

** Hofbauer, S; Hagmüller, A; Schaffner, I; Mlynek, G; Krutzler, M; Stadlmayr, G; Pirker, KF; Obinger, C; Daims, H; Djinović-Carugo, K; Furtmüller, PG; Structure and heme-binding properties of HemQ (chlorite dismutase-like protein) from Listeria monocytogenes..

Arch Biochem Biophys. 2015; 574:36-48 WoS PubMed PUBMED Central FullText FullText_BOKU

** Palinkas, Z; Furtmuller, PG; Nagy, A; Jakopitsch, C; Pirker, KF; Magierowski, M; Jasnos, K; Wallace, JL; Obinger, C; Nagy, P Interactions of hydrogen sulfide with myeloperoxidase.

BRIT J PHARMACOL. 2015; 172(6): 1516-1532. WoS PubMed PUBMED Central FullText FullText_BOKU

** Schaffner, I; Hofbauer, S; Krutzler, M; Pirker, KF; Bellei, M; Stadlmayr, G; Mlynek, G; Djinovic-Carugo, K; Battistuzzi, G; Furtmüller, PG; Daims, H; Obinger, C; Dimeric chlorite dismutase from the nitrogen-fixing cyanobacterium Cyanothece sp. PCC7425..

Mol Microbiol. 2015; 96(5):1053-1068 WoS PubMed FullText FullText_BOKU

** Schaffner, I; Hofbauer, S; Krutzler, M; Pirker, KF; Furtmuller, PG; Obinger, C Mechanism of chlorite degradation to chloride and dioxygen by the enzyme chlorite dismutase.

ARCH BIOCHEM BIOPHYS. 2015; 574: 18-26. WoS FullText FullText_BOKU

** Solala, I; Henniges, U; Pirker, KF; Rosenau, T; Potthast, A; Vuorinen, T Mechanochemical reactions of cellulose and styrene.

CELLULOSE. 2015; 22(5): 3217-3224. WoS FullText FullText_BOKU

** Soudi, M; Paumann-Page, M; Delporte, C; Pirker, KF; Bellei, M; Edenhofer, E; Stadlmayr, G; Battistuzzi, G; Boudjeltia, KZ; Furtmüller, PG; Van Antwerpen, P; Obinger, C; Multidomain human peroxidasin 1 is a highly glycosylated and stable homotrimeric high spin ferric peroxidase..

J Biol Chem. 2015; 290(17):10876-10890 WoS PubMed PUBMED Central FullText FullText_BOKU

** Zámocký, M; Hofbauer, S; Schaffner, I; Gasselhuber, B; Nicolussi, A; Soudi, M; Pirker, KF; Furtmüller, PG; Obinger, C; Independent evolution of four heme peroxidase superfamilies..

Arch Biochem Biophys. 2015; 574:108-119 WoS PubMed PUBMED Central FullText FullText_BOKU

Conference & Workshop Proceedings, Paper, Abstract

** Palinkas, Z; Furtmuller, PG; Nagy, A; Jakopitsch, C; Pirker, KF; Magierowski, M; Jasnos, K; Wallace, JL; Obinger, C; Nagy, P Interactions of hydrogen sulfide with myeloperoxidase.
[3rd European Conference on the Biology of Hydrogen Sulfide (H2S), Athens, Greece, 03.05.2015 - 06.05.2015]

NITRIC OXIDE-BIOL CH. 2015; 47: S58-S59. WoS FullText FullText_BOKU

Liebner, F; Bertoli, L; Pour, G; Amer, H; Pirker, K; Rosenau, T (2015): The long and windy road: Investigation of the early stages of nitrogen accumulation in humic substances.
[5th International Symposium on Soil Organic Matter 2015, Göttingen, Germany, 20.09.2015 - 24.09.2015]

In: Georg-August-University Göttingen, Book of Abstracts

2014

Journal Articles

** Hofbauer, S; Gruber, C; Pirker, KF; Sündermann, A; Schaffner, I; Jakopitsch, C; Oostenbrink, C; Furtmüller, PG; Obinger, C; Transiently produced hypochlorite is responsible for the irreversible inhibition of chlorite dismutase..

Biochemistry. 2014; 53(19):3145-3157 WoS PubMed PUBMED Central FullText FullText_BOKU

** Hofbauer, S; Gysel, K; Bellei, M; Hagmüller, A; Schaffner, I; Mlynek, G; Kostan, J; Pirker, KF; Daims, H; Furtmüller, PG; Battistuzzi, G; Djinović-Carugo, K; Obinger, C; Manipulating conserved heme cavity residues of chlorite dismutase: effect on structure, redox chemistry, and reactivity..

Biochemistry. 2014; 53(1):77-89 WoS PubMed PUBMED Central FullText FullText_BOKU

** Jakopitsch, C; Pirker, KF; Flemmig, J; Hofbauer, S; Schlorke, D; Furtmüller, PG; Arnhold, J; Obinger, C; Mechanism of reaction of chlorite with mammalian heme peroxidases..

J Inorg Biochem. 2014; 135:10-19 WoS PubMed PUBMED Central FullText FullText_BOKU

** Krondorfer, I; Brugger, D; Paukner, R; Scheiblbrandner, S; Pirker, KF; Hofbauer, S; Furtmüller, PG; Obinger, C; Haltrich, D; Peterbauer, CK; Agaricus meleagris pyranose dehydrogenase: influence of covalent FAD linkage on catalysis and stability..

Arch Biochem Biophys. 2014; 558:111-119 WoS PubMed PUBMED Central FullText FullText_BOKU

** Ribeiro, ED; Pinotsis, N; Ghisleni, A; Salmazo, A; Konarev, PV; Kostan, J; Sjoblom, B; Schreiner, C; Polyansky, AA; Gkougkoulia, EA; Holt, MR; Aachmann, FL; Zagrovic, B; Bordignon, E; Pirker, KF; Svergun, DI; Gautel, M; Djinovic-Carugo, K The Structure and Regulation of Human Muscle alpha-Actinin.

CELL. 2014; 159(6): 1447-1460. WoS FullText FullText_BOKU

** Stefanovic, B; Pirker, KF; Rosenau, T; Potthast, A Effects of tribochemical treatments on the integrity of cellulose.

CARBOHYD POLYM. 2014; 111: 688-699. WoS PubMed FullText FullText_BOKU

** Yaghini, E; Pirker, KF; Kay, CW; Seifalian, AM; MacRobert, AJ; Quantification of Reactive Oxygen Species Generation by Photoexcitation of PEGylated Quantum Dots..

Small. 2014; 10(24):5106-5115 WoS PubMed FullText FullText_BOKU

Conference & Workshop Proceedings, Paper, Abstract

** Furtmuller, PG; Auer, M; Gruber, C; Pirker, K; Krioss, D; Hofbauer, S; Soudi, M; Obinger, C; Zamocky, M; Bellei, M; Battistuzzi, G New highly stable chlorinating bacterial peroxidase with autocatalytically formed covalent heme to protein bonds.
[International Conference on Bioinorganic Chemistry ICBIC-16 2013, Grenoble, France, 22.07.2013 - 26.07.2013]

J BIOL INORG CHEM. 2014; 19: S281-S281. WoS

** Hofbauer, S; Gruber, C; Pirker, KF; Schaffner, I; Furtmuller, PG; Obinger, C; Hagmuller, A; Gysel, K; Mlynek, G; Kostan, J; Djinovic-Carugo, K; Bellei, M; Battistuzzi, G; Daims, H Understanding Chlorite Dismutase from Candidatus Nitrospira defluvii.
[International Conference on Bioinorganic Chemistry ICBIC-16 2013, Grenoble, France, 22.07.2013 - 26.07.2013]

J BIOL INORG CHEM. 2014; 19: S253-S253. WoS

** Hofbauer, S; Gruber, C; Schaffner, I; Pirker, KF; Jakopitsch, C; Sundermann, A; Oostenbrink, C; Furtmuller, PG; Obinger, C Understanding the inhibition mechanism of chlorite dismutase from the nitrite-oxidizing bacterium Candidatus Nitrospira defluvii.
[12th European Biological Inorganic Chemistry Conference EuroBIC 2014, Zürich, Switzerland, 24.08.2014 - 28.08.2014]

J BIOL INORG CHEM. 2014; 19: S839-S839. WoS

** Jakopitsch, C; Pirker, KF; Flemmig, J; Hofbauer, S; Schlorke, D; Furtmuller, PG; Arnhold, J; Obinger, C Mechanism of reaction of chlorite with mammalian peroxidases.
[12th European Biological Inorganic Chemistry Conference EuroBIC 2014, Zürich, Switzerland, 24.08.2014 - 28.08.2014]

J BIOL INORG CHEM. 2014; 19: S839-S840. WoS

** Nicolussi, A; Auer, M; Schutz, G; Gruber, C; Pirker, K; Zamocky, M; Furtmuller, PG; Obinger, C Investigation of a prokaryotic peroxidase with a covalently bound heme b from the cyanobacterium Lyngbya sp PCC 8106.
[12th European Biological Inorganic Chemistry Conference EuroBIC 2014, Zürich, Switzerland, 24.08.2014 - 28.08.2014]

J BIOL INORG CHEM. 2014; 19: S841-S841. WoS

** Pirker, KF; Palinkas, Z; Furtmuller, PG; Nagy, A; Jakopitsch, C; Obinger, C; Nagy, P Hydrogen sulfide functions as reversible inhibitor and electron donor for human myeloperoxidase.
[12th European Biological Inorganic Chemistry Conference EuroBIC 2014, Zürich, Switzerland, 24.08.2014 - 28.08.2014]

J BIOL INORG CHEM. 2014; 19: S768-S768. WoS

** Zamocky, M; Pirker, KF; Furtmuller, PG; Obinger, C Stepwise molecular evolution of a synthetic heme b peroxidase based on the hemeless C-terminal domain of a catalase-peroxidase.
[International Conference on Bioinorganic Chemistry ICBIC-16 2013, Grenoble, France, 22.07.2013 - 26.07.2013]

J BIOL INORG CHEM. 2014; 19: S68-S68. WoS

** Zamocky, M; Pirker, KF; Gasselhuber, B; Furtmuller, PG; Chovanova, K; Harichova, J; Obinger, C Molecular peculiarities of hybrid B heme peroxidases.
[12th European Biological Inorganic Chemistry Conference EuroBIC 2014, Zürich, Switzerland, 24.08.2014 - 28.08.2014]

J BIOL INORG CHEM. 2014; 19: S841-S842. WoS

Hofbauer, S., Schaffner, I., Gruber, C., Pirker, K.F., Jakopitsch, C., Sündermann, A., Oostenbrink, C., Furtmüller, P.G., Obinger, C. (2014): Mechanism of inhibition of chlorite dismutase.
[OxiZymes 2014, Vienna, Austria, 01.07.2014 - 04.07.2014]

In: C. Obinger & C. Peterbauer, OxiZymes 2014, P13

Jakopitsch, C., Pirker, K.F., Flemmig, J. Hofbauer, S., Furtmüller, P.G., Schlorke, D., Arnhold, J., Obinger, C. (2014): Chlorite inactivates mammalian peroxidases. [Poster]
[OxiZymes 2014, Vienna, Austria, 01.07.2014 - 04.07.2014]

In: C. Obinger & C. Peterbauer, OxiZymes 2014, P100

Nicolussi, A., Auer, M., Schütz, G., Pirker, K.F., Zamocky, M., Furtmüller, P.G., Obinger, C. (2014): Characterization of a novel cyanobacterial peroxidase with covalently bound heme. [Poster]
[OxiZymes 2014, Vienna, Austria, 01.07.2014 - 04.07.2014]

In: C. Obinger & C. Peterbauer, OxiZymes 2014, P134

Obinger, C., Hofbauer, S., Schaffner, I., Pirker, K. F., Mlynek, G.,Djinovic-Carugo, K., Battistuzzi, G., Furtmüller, P. G (2014): Chlorite to chloride and O2 conversion: new lessons from structural and mechanistic investigations of chlorite dismutase.
[12th European Biological Inorganic Chemistry Conference EuroBIC 2014, Zürich, Switzerland, 24.08.2014 - 28.08.2014]

In: EUROBIC, J. Biol. Inorg. Chem. 19, S757.

Pirker, K.F., Pálinkás, Z., Furtmüller, P.G., Nagy, A., Jakopitsch, C., Obinger, C., Nagy, P. (2014): Interactions of hydrogen sulfide with human myeloperoxidase. [Poster]
[OxiZymes 2014, Vienna, Austria, 01.07.2014 - 04.07.2014]

In: C. Obinger & C. Peterbauer, OxiZymes 2014, P142

Ribeiro-Jr, EA; Pirker, KF; Salmazo, A; Pinotsis, N; Schreiner, C; Ghisleni, A; Gautel, M; Bordignon, E; Djinović-Carugo, K (2014): Structural insight into (human skeletal muscle) alpha-actinin protein using SDSL in combination with cw and pulsed EPR. [VORTRAG].
[The 47th Annual International Meeting of the ESR Spectroscopy Group of the Royal Society of Chemistry 2014, Dundee, Scotland, UK, 06.04.2014 - 10.04.2014]

In: University of Dundee, The 47th Annual International Meeting of the ESR Spectroscopy Group of the Royal Society of Chemistry, Conference Programme

Schaffner, I., Hofbauer, S., Pirker, K.F., Furtmüller, P.G., Obinger, C. (2014): Biochemical and biophysical characterization of a new functional chlorite dismutase. [Poster]
[OxiZymes 2014, Vienna, Austria, 01.07.2014 - 04.07.2014]

In: C. Obinger & C. Peterbauer, OxiZymes 2014, P154

2013

Journal Articles

** Auer, M; Gruber, C; Bellei, M; Pirker, KF; Zamocky, M; Kroiss, D; Teufer, SA; Hofbauer, S; Soudi, M; Battistuzzi, G; Furtmüller, PG; Obinger, C; A stable bacterial peroxidase with novel halogenating activity and an autocatalytically linked heme prosthetic group..

J Biol Chem. 2013; 288(38):27181-27199 WoS PubMed PUBMED Central FullText FullText_BOKU

** Bamonti, L; Hosoya, T; Pirker, KF; Bohmdorfer, S; Mazzini, F; Galli, F; Netscher, T; Rosenau, T; Gille, L Tocopheramines and tocotrienamines as antioxidants: ESR spectroscopy, rapid kinetics and DFT calculations.

BIOORGAN MED CHEM. 2013; 21(17): 5039-5046. WoS FullText FullText_BOKU

Conference & Workshop Proceedings, Paper, Abstract

Auer, M. Gruber, C. Bellei, M., Pirker, K., Kroiß, D., Zamocky, M. Teufer, A. S., Soudi, M., Battistuzzi, G., Obinger, C. and Furtmüller P. G. (2013): New highly stable chlorinating bacterial peroxidase with autocatalytically formed covalent heme to protein bonds. [Poster]
[International Conference on Bioinorganic Chemistry ICBIC-16 2013, Grenoble, France, 22.07.2013 - 26.07.2013]

In: Marc Fontecave, 16th International Conference on Biological Inorganic Chemistry, http://icbic16.abstractcentral.com/

Hofbauer, S., Flego, N., Schaffner, I., Pirker, K. F., Furtmüller, P. G., Howes, B. D., Obinger, C., Smulevich, G. (2013): Spectroscopic Characterization of wild-type Chlorite Dismutase from Candidatus “Nitrospira defluvii” and selected variants. [Poster]
[15th European Conference on the Spectroscopy of Biological Molecules, Oxford, UK, 25.08.2013 - 30.08.2013]

In: European society for Spectroscopy of Biological Molecules , Conference on the Spectroscopy of Biological Molecules, http://www.ecsbm.eu/node/14

Hofbauer, S., Gruber, C., Pirker, K. F., Schaffner, I., Hagmüller, A., Gysel, K., Mlynek, G., Kostan, J., Bellei, M., Daims, H., Djinovic-Carugo, K. Battistuzzi, G., Furtmüller, P.G. and Obinger, C (2013): Understanding highly stable chlorite dismutase form nitrate-oxidizing bacterium Candidatus “Nitrospira defluvii”. [Poster]
[International Conference on Bioinorganic Chemistry ICBIC-16 2013, Grenoble, France, 22.07.2013 - 26.07.2013]

In: Marc Fontecave, 16th International Conference on Biological Inorganic Chemistry, http://icbic16.abstractcentral.com/

Ribeiro-Jr, EA; Pirker, KF; Salmazo, A; Pinotsis, N; Schreiner, C; Ghisleni, A; Gautel, M; Kay, CWM; Djinovic-Carugo, K (2013): Structural insight into (human skeletal muscle) alpha-actinin protein using SDSL in combination with cw and pulsed EPR. [VORTRAG].
[XXV International EPR Seminar, Castá-Papiernicka, Slovak Republic, 10.04.2013 - 12.04.2013]

In: Erik Klein, Dana Dvoranová (Eds), Book of Abstracts XXV International EPR Seminar

Zámocký, M., Pirker, K.F., Furtmüller, P.G., and Obinger, C (2013): Stepwise molecular evolution of a synthetic heme b peroxidase based on the hemeless C-terminal domain of a catalase-peroxidase.
[International Conference on Bioinorganic Chemistry ICBIC-16 2013, Grenoble, France, 22.07.2013 - 26.07.2013]

In: Marc Fontecave, 16th International Conference on Biological Inorganic Chemistry, http://icbic16.abstractcentral.com/

2012

Journal Articles

** Hofbauer, S; Bellei, M; Sündermann, A; Pirker, KF; Hagmüller, A; Mlynek, G; Kostan, J; Daims, H; Furtmüller, PG; Djinović-Carugo, K; Oostenbrink, C; Battistuzzi, G; Obinger, C; Redox thermodynamics of high-spin and low-spin forms of chlorite dismutases with diverse subunit and oligomeric structures..

Biochemistry. 2012; 51(47):9501-9512 WoS PubMed PUBMED Central FullText FullText_BOKU

* Goodman, BA; Ferreira Severino, J; Pirker, KF (2012): Reactions of green and black teas with Cu(II)..

Food Funct. 2012; 3(4):399-409 PubMed FullText FullText_BOKU

* Pirker, KF; Baratto, MC; Basosi, R; Goodman, BA (2012): Influence of pH on the speciation of copper(II) in reactions with the green tea polyphenols, epigallocatechin gallate and gallic acid..

J Inorg Biochem. 2012; 112(47):10-16 PubMed PUBMED Central FullText FullText_BOKU

2011

** Pirker, KF; Oliveira, J; De Freitas, V; Goodman, BA; Mateus, N Antiradical Properties of Red Wine Portisins.

J AGR FOOD CHEM. 2011; 59(21): 11833-11837. WoS PubMed FullText FullText_BOKU

* Phan, G; Remaut, H; Wang, T; Allen, WJ; Pirker, KF; Lebedev, A; Henderson, NS; Geibel, S; Volkan, E; Yan, J; Kunze, MB; Pinkner, JS; Ford, B; Kay, CW; Li, H; Hultgren, SJ; Thanassi, DG; Waksman, G (2011): Crystal structure of the FimD usher bound to its cognate FimC-FimH substrate..

Nature. 2011; 474(7349):49-53 PubMed PUBMED Central FullText FullText_BOKU

* Severino, JF; Goodman, BA; Reichenauer, TG; Pirker, KF (2011): Is there a redox reaction between Cu(II) and gallic acid?.

Free Radic Res. 2011; 45(2):115-124 PubMed FullText FullText_BOKU

2010

** Schinko, T; Berger, H; Lee, W; Gallmetzer, A; Pirker, K; Pachlinger, R; Buchner, I; Reichenauer, T; Güldener, U; Strauss, J; Transcriptome analysis of nitrate assimilation in Aspergillus nidulans reveals connections to nitric oxide metabolism..

Mol Microbiol. 2010; 78(3):720-738 WoS PubMed PUBMED Central FullText FullText_BOKU

* Pirker, KF; Goodman, BA (2010): Caffeoylquinic acid derived free radicals identified during antioxidant reactions of bitter tea (Ilex latifolia and Ilex kudincha)..

Food Funct. 2010; 1(3):262-268 PubMed FullText FullText_BOKU

2009

** Pirker, KF; Kay, CW; Stolze, K; Tunega, D; Reichenauer, TG; Goodman, BA Free radical generation in rosmarinic acid investigated by electron paramagnetic resonance spectroscopy..

Free Radic Res. 2009; 43(1):47-57 WoS PubMed FullText FullText_BOKU

** Severino, JF; Goodman, BA; Kay, CW; Stolze, K; Tunega, D; Reichenauer, TG; Pirker, KF Free radicals generated during oxidation of green tea polyphenols: electron paramagnetic resonance spectroscopy combined with density functional theory calculations..

Free Radic Biol Med. 2009; 46(8):1076-1088 WoS PubMed FullText FullText_BOKU

2008

* Pirker, KF; Severino, JF; Reichenauer, TG; Goodman, BA (2008): Free radical processes in green tea polyphenols (GTP) investigated by electron paramagnetic resonance (EPR) spectroscopy..

Biotechnol Annu Rev. 2008; 14(1):349-401 PubMed FullText FullText_BOKU

2006

** Pirker, KF; Stolze, K; Reichenauer, TG; Nohl, H; Goodman, BA Are the biological properties of kaempferol determined by its oxidation products?.

Free Radic Res. 2006; 40(5):513-521 WoS PubMed FullText FullText_BOKU

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