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Dohm Juliane

Scientific publications from BOKU scientists, especially those which are published in SCI / SSCI journals, or in other refereed journals, proceedings, monographs as well as articles in collected volumes are listed under PUBLICATIONS.

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** = Publications listed in SCI/SSCI - Journals (published in Web of Science)
* = peer-reviewed publication (not listed in SCI/SSCI)
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= Open Access - Publications

 

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Heistinger, L; Dohm, JC; Paes, BG; Koizar, D; Troyer, C; Ata, O; Steininger-Mairinger, T; Mattanovich, D:
Genotypic and phenotypic diversity among Komagataella species reveals a hidden pathway for xylose utilization
MICROB CELL FACT. 2022; 21(1), 70, 2022
Koorakula, R; Ghanbari, M; Schiavinato, M; Wegl, G; Dohm, JC; Domig, KJ; :
Storage media and RNA extraction approaches substantially influence the recovery and integrity of livestock fecal microbial RNA.
PeerJ. 2022; 10:e13547, 2022
Koorakula, R; Schiavinato, M; Ghanbari, M; Wegl, G; Grabner, N; Koestelbauer, A; Klose, V; Dohm, JC; Domig, KJ; :
Metatranscriptomic Analysis of the Chicken Gut Resistome Response to In-Feed Antibiotics and Natural Feed Additives.
Front Microbiol. 2022; 13:833790, 2022
Wascher, FL; Stralis-Pavese, N; McGrath, JM; Schulz, B; Himmelbauer, H; Dohm, JC:
Genomic distances reveal relationships of wild and cultivated beets
NAT COMMUN. 2022; 13(1), 2021, 2022
Bodrug-Schepers, A; Stralis-Pavese, N; Buerstmayr, H; Dohm, JC; Himmelbauer, H; :
Quinoa genome assembly employing genomic variation for guided scaffolding.
Theor Appl Genet. 2021; 134(11):3577-3594, 2021
Lehner, R; Blazek, L; Minoche, AE; Dohm, JC; Himmelbauer, H; :
Assembly and characterization of the genome of chard (Beta vulgaris ssp. vulgaris var. cicla).
J Biotechnol. 2021; 333:-76, 2021
Schiavinato, M; Bodrug-Schepers, A; Dohm, JC; Himmelbauer, H; :
Subgenome evolution in allotetraploid plants.
Plant J. 2021; 106(3):672-688, 2021
Schuller, A; Cserjan-Puschmann, M; Köppl, C; Grabherr, R; Wagenknecht, M; Schiavinato, M; Dohm, JC; Himmelbauer, H; Striedner, G; :
Adaptive Evolution in Producing Microtiter Cultivations Generates Genetically Stable Escherichia coli Production Hosts for Continuous Bioprocessing.
Biotechnol J. 2021; 16(3):e2000376, 2021
Dohm, JC; Peters, P; Stralis-Pavese, N; Himmelbauer, H; :
Benchmarking of long-read correction methods.
NAR Genom Bioinform. 2020; 2(2):lqaa037, 2020
Schiavinato, M; Marcet-Houben, M; Dohm, JC; Gabaldón, T; Himmelbauer, H; :
Parental origin of the allotetraploid tobacco Nicotiana benthamiana.
Plant J. 2020; 102(3):541-554, 2020
Zwickl, NF; Stralis-Pavese, N; Schäffer, C; Dohm, JC; Himmelbauer, H; :
Comparative genome characterization of the periodontal pathogen Tannerella forsythia.
BMC Genomics. 2020; 21(1):150, 2020
Rodríguez Del Río, Á; Minoche, AE; Zwickl, NF; Friedrich, A; Liedtke, S; Schmidt, T; Himmelbauer, H; Dohm, JC; :
Genomes of the wild beets Beta patula and Beta vulgaris ssp. maritima.
Plant J. 2019; 99(6):1242-1253, 2019
Schiavinato, M; Strasser, R; Mach, L; Dohm, JC; Himmelbauer, H:
Genome and transcriptome characterization of the glycoengineered Nicotiana benthamiana line Delta XT/FT
BMC GENOMICS. 2019; 20, 594, 2019
Tomek, MB; Maresch, D; Windwarder, M; Friedrich, V; Janesch, B; Fuchs, K; Neumann, L; Nimeth, I; Zwickl, NF; Dohm, JC; Everest-Dass, A; Kolarich, D; Himmelbauer, H; Altmann, F; Schaffer, C:
A General Protein O-Glycosylation Gene Cluster Encodes the Species-Specific Glycan of the Oral Pathogen Tannerella forsythia: O-Glycan Biosynthesis and Immunological Implications
FRONT MICROBIOL. 2018; 9: , 2018
Capistrano-Gossmann, GG; Ries, D; Holtgräwe, D; Minoche, A; Kraft, T; Frerichmann, SLM; Rosleff Soerensen, T; Dohm, JC; González, I; Schilhabel, M; Varrelmann, M; Tschoep, H; Uphoff, H; Schütze, K; Borchardt, D; Toerjek, O; Mechelke, W; Lein, JC; Schechert, AW; Frese, L; Himmelbauer, H; Weisshaar, B; Kopisch-Obuch, FJ; :
Crop wild relative populations of Beta vulgaris allow direct mapping of agronomically important genes.
Nat Commun. 2017; 8:15708, 2017
Harnisch, C; Cuzic-Feltens, S; Dohm, JC; Gotze, M; Himmelbauer, H; Wahle, E:
Oligoadenylation of 3 ' decay intermediates promotes cytoplasmic mRNA degradation in Drosophila cells
RNA, 22, 428-442; ISSN 1355-8382, 2016
Nachshon, A; Abu-Toamih Atamni, HJ; Steuerman, Y; Sheikh-Hamed, R; Dorman, A; Mott, R; Dohm, JC; Lehrach, H; Sultan, M; Shamir, R; Sauer, S; Himmelbauer, H; Iraqi, FA; Gat-Viks, I; :
Dissecting the Effect of Genetic Variation on the Hepatic Expression of Drug Disposition Genes across the Collaborative Cross Mouse Strains.
Front Genet. 2016; 7:172, 2016
Schwichtenberg, K; Wenke, T; Zakrzewski, F; Seibt, KM; Minoche, A; Dohm, JC; Weisshaar, B; Himmelbauer, H; Schmidt, T:
Diversification, evolution and methylation of short interspersed nuclear element families in sugar beet and related Amaranthaceae species
PLANT J. 2016; 85(2): 229-244. , 2016
Vlasova, A; Capella-Gutiérrez, S; Rendón-Anaya, M; Hernández-Oñate, M; Minoche, AE; Erb, I; Câmara, F; Prieto-Barja, P; Corvelo, A; Sanseverino, W; Westergaard, G; Dohm, JC; Pappas, GJ; Saburido-Alvarez, S; Kedra, D; Gonzalez, I; Cozzuto, L; Gómez-Garrido, J; Aguilar-Morón, MA; Andreu, N; Aguilar, OM; Garcia-Mas, J; Zehnsdorf, M; Vázquez, MP; Delgado-Salinas, A; Delaye, L; Lowy, E; Mentaberry, A; Vianello-Brondani, RP; García, JL; Alioto, T; Sánchez, F; Himmelbauer, H; Santalla, M; Notredame, C; Gabaldón, T; Herrera-Estrella, A; Guigó, R; :
Genome and transcriptome analysis of the Mesoamerican common bean and the role of gene duplications in establishing tissue and temporal specialization of genes.
Genome Biol. 2016; 17:32, 2016
Minoche, AE; Dohm, JC; Schneider, J; Holtgräwe, D; Viehöver, P; Montfort, M; Rosleff Sörensen, T; Weisshaar, B; Himmelbauer, H; :
Exploiting single-molecule transcript sequencing for eukaryotic gene prediction.
Genome Biol. 2015; 16:184, 2015
Heitkam, T; Holtgräwe, D; Dohm, JC; Minoche, AE; Himmelbauer, H; Weisshaar, B; Schmidt, T; :
Profiling of extensively diversified plant LINEs reveals distinct plant-specific subclades.
Plant J. 2014; 79(3):385-397, 2014
Zakrzewski, F; Schubert, V; Viehoever, P; Minoche, AE; Dohm, JC; Himmelbauer, H; Weisshaar, B; Schmidt, T; :
The CHH motif in sugar beet satellite DNA: a modulator for cytosine methylation.
Plant J. 2014; 78(6):937-950, 2014
Llorens, F; Hummel, M; Pantano, L; Pastor, X; Vivancos, A; Castillo, E; Mattlin, H; Ferrer, A; Ingham, M; Noguera, M; Kofler, R; Dohm, JC; Pluvinet, R; Bayés, M; Himmelbauer, H; del Rio, JA; Martí, E; Sumoy, L; :
Microarray and deep sequencing cross-platform analysis of the mirRNome and isomiR variation in response to epidermal growth factor.
BMC Genomics. 2013; 14:371, 2013
Weber, B; Heitkam, T; Holtgräwe, D; Weisshaar, B; Minoche, AE; Dohm, JC; Himmelbauer, H; Schmidt, T; :
Highly diverse chromoviruses of Beta vulgaris are classified by chromodomains and chromosomal integration.
Mob DNA. 2013; 4(1):8, 2013
Berndt, H; Harnisch, C; Rammelt, C; Stöhr, N; Zirkel, A; Dohm, JC; Himmelbauer, H; Tavanez, JP; Hüttelmaier, S; Wahle, E; :
Maturation of mammalian H/ACA box snoRNAs: PAPD5-dependent adenylation and PARN-dependent trimming.
RNA. 2012; 18(5):958-972, 2012
Llorens, F; Hummel, M; Pastor, X; Ferrer, A; Pluvinet, R; Vivancos, A; Castillo, E; Iraola, S; Mosquera, AM; González, E; Lozano, J; Ingham, M; Dohm, JC; Noguera, M; Kofler, R; del Río, JA; Bayés, M; Himmelbauer, H; Sumoy, L; :
Multiple platform assessment of the EGF dependent transcriptome by microarray and deep tag sequencing analysis.
BMC Genomics. 2011; 12:326, 2011
Minoche, AE; Dohm, JC; Himmelbauer, H; :
Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and genome analyzer systems.
Genome Biol. 2011; 12(11):R112, 2011
Puente, XS; Pinyol, M; Quesada, V; Conde, L; Ordóñez, GR; Villamor, N; Escaramis, G; Jares, P; Beà, S; González-Díaz, M; Bassaganyas, L; Baumann, T; Juan, M; López-Guerra, M; Colomer, D; Tubío, JM; López, C; Navarro, A; Tornador, C; Aymerich, M; Rozman, M; Hernández, JM; Puente, DA; Freije, JM; Velasco, G; Gutiérrez-Fernández, A; Costa, D; Carrió, A; Guijarro, S; Enjuanes, A; Hernández, L; Yagüe, J; Nicolás, P; Romeo-Casabona, CM; Himmelbauer, H; Castillo, E; Dohm, JC; de Sanjosé, S; Piris, MA; de Alava, E; San Miguel, J; Royo, R; Gelpí, JL; Torrents, D; Orozco, M; Pisano, DG; Valencia, A; Guigó, R; Bayés, M; Heath, S; Gut, M; Klatt, P; Marshall, J; Raine, K; Stebbings, LA; Futreal, PA; Stratton, MR; Campbell, PJ; Gut, I; López-Guillermo, A; Estivill, X; Montserrat, E; López-Otín, C; Campo, E; :
Whole-genome sequencing identifies recurrent mutations in chronic lymphocytic leukaemia.
Nature. 2011; 475(7354):101-105, 2011
Vivancos, AP; Güell, M; Dohm, JC; Serrano, L; Himmelbauer, H; :
Strand-specific deep sequencing of the transcriptome.
Genome Res. 2010; 20(7):98-99, 2010
Dohm, JC; Lottaz, C; Borodina, T; Himmelbauer, H; :
Substantial biases in ultra-short read data sets from high-throughput DNA sequencing.
Nucleic Acids Res. 2008; 36(16):e105, 2008
Dohm, JC; Lottaz, C; Borodina, T; Himmelbauer, H; :
SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing.
Genome Res. 2007; 17(11):169-706, 2007
Dohm, JC; Tsend-Ayush, E; Reinhardt, R; Grützner, F; Himmelbauer, H; :
Disruption and pseudoautosomal localization of the major histocompatibility complex in monotremes.
Genome Biol. 2007; 8(8):R175, 2007

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