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Evolutionary dynamics of the repeat landscape in sugar beet and its wild relatives

Project Leader
Blazek Lisa, BOKU Project Leader
Duration:
01.08.2020-31.07.2023
Programme:
Doktorand(inn)enprogramm der Ă–AW (DOC)
Type of Research
Applied Research
Staff
BOKU Research Units
Institute of Computational Biology
Funded by
Ă–sterreichische Akademie der Wissenschaften, Dr. Ignaz- Seipel Platz, 1010 Wien, Austria
Abstract
Sugar beet (Beta vulgaris ssp. vulgaris) is a young crop plant that originated from wild sea beet (Beta vulgaris ssp. maritima), a coastal plant native to Western and Southern Europe. It has been shown that transposons have influence onto the genome structure and gene functionality of beets. Of the many different repeats contained in a genome, only a small subset is intact and fully functional. However, this small portion may have a huge impact on the genome and as consequence on the phenotype as well. By creating alternative splicing patterns, introduction of novel promoters, change of gene regulation or simply by inactivation of gene function. Thus, the genome is constantly in motion: Transposons get inserted into new positions in the genome; thereafter, selection and mutational processes act upon them. Repeats disrupting crucial functions will disappear quickly, while other elements which are neutral or even beneficial will stay on. By comparing different genomic sequence data of domesticated beets and their wild relatives, we assess the mutagenic events that took place in the beet genome in the recent evolutionary past and explore the role that transposons have played in the evolution of the beet genome. Advances in the repeat-related knowledge of the beet genome may discover new insights about recent transposon evolution and will provide a foundation for further improvements of beet as a crop plant.
Keywords
Bioinformatics; Evolutionary research; Genomics; Plant breeding;
Bioinformatics; Evolutionary research; Genomic; Plantbreeding;
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