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** = Publications listed in SCI/SSCI - Journals (published in Web of Science)
* = peer-reviewed publication (not listed in SCI/SSCI)
Only: Full paper/article, Review, Proceedings Paper

2023

** Floros, DJ; Xu, KK; Berthiller, F; Schwartz-Zimmermann, H Comparison of chromatographic conditions for the targeted tandem mass spectrometric determination of 354 mammalian metabolites.

J CHROMATOGR A. 2023; 1697, 463985 WoS PubMed FullText FullText_BOKU

** Mahood, EH; Bennett, AA; Komatsu, K; Kruse, LH; Lau, V; Ishka, MR; Jiang, YL; Bravo, A; Louie, K; Bowen, BP; Harrison, MJ; Provart, NJ; Vatamaniuk, OK; Moghe, GD Information theory and machine learning illuminate large-scale metabolomic responses of Brachypodium distachyon to environmental change.

PLANT J. 2023; 114(3): 463-481. WoS PubMed FullText FullText_BOKU

** Santangeli, M; Steininger-Mairinger, T; Vetterlein, D; Hann, S; Oburger, E; Maize (Zea mays L.) root exudation profiles change in quality and quantity during plant development - A field study..

Plant Sci. 2023; 338:111896 WoS PubMed FullText FullText_BOKU

** Schrom, S; Kleinegger, F; Anders, I; Hebesberger, T; Karner, C; Liesinger, L; Birner-Gruenberger, R; Renner, W; Pichler, M; Grillari, R; Aigelsreiter, A; Rinner, B MUG CCArly: A Novel Autologous 3D Cholangiocarcinoma Model Presents an Increased Angiogenic Potential.

CANCERS. 2023; 15(6), 1757 WoS PubMed FullText FullText_BOKU

** Van Tassell, CP; Rosen, BD; Woodward-Greene, MJ; Silverstein, JT; Huson, HJ; Solkner, J; Boettcher, P; Rothschild, MF; Meszaros, G; Nakimbugwe, HN; Gondwe, TN; Muchadeyi, FC; Nandolo, W; Mulindwa, HA; Banda, LJ; Kaumbata, W; Getachew, T; Haile, A; Soudre, A; Ouedraogo, D; Rischkowsky, BA; Mwai, AO; Dzomba, EF; Nash, O; Abegaz, S; Masiga, CW; Wurzinger, M; Sayre, BL; Stella, A; Tosser-Klopp, G; Sonstegard, TS The African Goat Improvement Network: a scientific group empowering smallholder farmers.

FRONT GENET. 2023; 14, 1183240 WoS PubMed FullText FullText_BOKU

2022

** Aringhieri, R; Hirsch, P; Rauner, MS; Reuter-Oppermanns, M; Sommersguter-Reichmann, M; Central European journal of operations research (CJOR) "operations research applied to health services (ORAHS) in Europe: general trends and ORAHS 2020 conference in Vienna, Austria"..

Cent Eur J Oper Res. 2022; 30(1):1-18 WoS PubMed PUBMED Central FullText FullText_BOKU

** Doppler, M; Bueschl, C; Ertl, F; Woischitzschlaeger, J; Parich, A; Schuhmacher, R; Towards a broader view of the metabolome: untargeted profiling of soluble and bound polyphenols in plants..

Anal Bioanal Chem. 2022; 414(25):7421-7433 WoS PubMed PUBMED Central FullText FullText_BOKU

** El Abiead, Y; Bueschl, C; Panzenboeck, L; Wang, MX; Doppler, M; Seidl, B; Zanghellini, J; Dorrestein, PC; Koellensperger, G Heterogeneous multimeric metabolite ion species observed in LC-MS based metabolomics data sets.

ANAL CHIM ACTA. 2022; 1229, 340352 WoS PubMed FullText FullText_BOKU

** Flasch, M; Bueschl, C; Del Favero, G; Adam, G; Schuhmacher, R; Marko, D; Warth, B Elucidation of xenoestrogen metabolism by non-targeted, stable isotope-assisted mass spectrometry in breast cancer cells.

ENVIRON INT. 2022; 158, 106940 WoS PubMed FullText FullText_BOKU

** Gill, SP; Hunter, WR; Coulson, LE; Banat, IM; Schelker, J Synthetic and biological surfactant effects on freshwater biofilm community composition and metabolic activity.

APPL MICROBIOL BIOT. 2022; 106(19-20): 6847-6859. WoS PubMed FullText FullText_BOKU

** Helm, J; Hirtler, L; Altmann, F Towards Mapping of the Human Brain N-Glycome with Standardized Graphitic Carbon Chromatography.

BIOMOLECULES. 2022; 12(1), 85 WoS PubMed FullText FullText_BOKU

** Kheirandish, P; Petri, RM; Sener-Aydemir, A; Schwartz-Zimmermann, HE; Berthiller, F; Zebeli, Q; Pacifico, C Characterization of microbial intolerances and ruminal dysbiosis towards different dietary carbohydrate sources using an in vitro model.

J APPL MICROBIOL. 2022; 133(2): 458-476. WoS PubMed FullText FullText_BOKU

** Komuczki, D; Stadermann, A; Bentele, M; Unsoeld, A; Grillari, J; Mueller, MM; Paul, A; Fischer, S High cysteine concentrations in cell culture media lead to oxidative stress and reduced bioprocess performance of recombinant CHO cells.

BIOTECHNOL J. 2022; 17(11), e2200029 WoS PubMed FullText FullText_BOKU

** Koorakula, R; Ghanbari, M; Schiavinato, M; Wegl, G; Dohm, JC; Domig, KJ; Storage media and RNA extraction approaches substantially influence the recovery and integrity of livestock fecal microbial RNA..

PeerJ. 2022; 10:e13547 WoS PubMed PUBMED Central FullText FullText_BOKU

** Kruse, LH; Weigle, AT; Irfan, M; Martínez-Gómez, J; Chobirko, JD; Schaffer, JE; Bennett, AA; Specht, CD; Jez, JM; Shukla, D; Moghe, GD; Orthology-based analysis helps map evolutionary diversification and predict substrate class use of BAHD acyltransferases..

Plant J. 2022; 111(5):1453-1468 WoS PubMed FullText FullText_BOKU

** Oburger, E; Staudinger, C; Spiridon, A; Benyr, V; Aleksza, D; Wenzel, W; Santangeli, M A quick and simple spectrophotometric method to determine total carbon concentrations in root exudate samples of grass species.

PLANT SOIL. 2022; 478(1-2): 273-281. WoS PubMed FullText FullText_BOKU

** Olmo, R; Wetzels, SU; Armanhi, JSL; Arruda, P; Berg, G; Cernava, T; Cotter, PD; Araujo, SC; de Souza, RSC; Ferrocino, I; Frisvad, JC; Georgalaki, M; Hansen, HH; Kazou, M; Kiran, GS; Kostic, T; Krauss-Etschmann, S; Kriaa, A; Lange, L; Maguin, E; Mitter, B; Nielsen, MO; Olivares, M; Quijada, NM; Romaní-Pérez, M; Sanz, Y; Schloter, M; Schmitt-Kopplin, P; Seaton, SC; Selvin, J; Sessitsch, A; Wang, M; Zwirzitz, B; Selberherr, E; Wagner, M; Microbiome Research as an Effective Driver of Success Stories in Agrifood Systems - A Selection of Case Studies..

Front Microbiol. 2022; 13:834622 WoS PubMed PUBMED Central FullText FullText_BOKU

** Podrzaj, L; Burtscher, J; Domig, KJ; Comparative Genomics Provides Insights Into Genetic Diversity of Clostridium tyrobutyricum and Potential Implications for Late Blowing Defects in Cheese.

Front Microbiol. 2022; 13:889551 WoS PubMed PUBMED Central FullText FullText_BOKU

** Ricci, S; Pacifico, C; Castillo-Lopez, E; Rivera-Chacon, R; Schwartz-Zimmermann, HE; Reisinger, N; Berthiller, F; Zebeli, Q; Petri, RM Progressive microbial adaptation of the bovine rumen and hindgut in response to a step-wise increase in dietary starch and the influence of phytogenic supplementation.

FRONT MICROBIOL. 2022; 13, 920427 WoS PubMed FullText FullText_BOKU

** Romanov, MN; Sölkner, J; Zinovieva, NA; Wimmers, K; Weigend, S; Editorial: Traditional and up-to-date genomic insights into domestic animal diversity..

Front Genet. 2022; 13:1117708 WoS PubMed PUBMED Central FullText FullText_BOKU

** Sikarwar, VS; Pfeifer, C; Ronsse, F; Pohorely, M; Meers, E; Kaviti, AK; Jeremias, M Progress in in-situ CO2-sorption for enhanced hydrogen production.

PROG ENERG COMBUST. 2022; 91, 101008 WoS FullText FullText_BOKU

** Vanhaverbeke, M; Attard, R; Bartekova, M; Ben-Aicha, S; Brandenburger, T; de Gonzalo-Calvo, D; Emanueli, C; Farrugia, R; Grillari, J; Hackl, M; Kalocayova, B; Martelli, F; Scholz, M; Wettinger, SB; Devaux, Y; Peripheral blood RNA biomarkers for cardiovascular disease from bench to bedside: a position paper from the EU-CardioRNA COST action CA17129..

Cardiovasc Res. 2022; 118(16):3183-3197 WoS PubMed PUBMED Central FullText FullText_BOKU

** Wasito, H; Causon, T; Hann, S Alternating in-source fragmentation with single-stage high-resolution mass spectrometry with high annotation confidence in non-targeted metabolomics.

TALANTA. 2022; 236, 122828 WoS PubMed FullText FullText_BOKU

** Wasito, H; Hermann, G; Fitz, V; Troyer, C; Hann, S; Koellensperger, G Yeast-based reference materials for quantitative metabolomics.

ANAL BIOANAL CHEM. 2022; 414(15): 4359-4368. WoS PubMed FullText FullText_BOKU

** Yan, S; Hodzic, A; Bandini, G; Yang, GL; Vanbeselaere, J; Gueerardel, Y Editorial: Characterization, Biosynthesis and Biological Functions of Novel Glyco-Epitopes.

FRONT MOL BIOSCI. 2022; 9, 871037 WoS PubMed FullText FullText_BOKU

2021

** Beihammer, G; Maresch, D; Altmann, F; Van Damme, EJM; Strasser, R Lewis A Glycans Are Present on Proteins Involved in Cell Wall Biosynthesis and Appear Evolutionarily Conserved Among Natural Arabidopsis thaliana Accessions.

FRONT PLANT SCI. 2021; 12, 630891 WoS PubMed FullText FullText_BOKU

** Feuerstein, ML; Kurulugama, RT; Hann, S; Causon, T Novel acquisition strategies for metabolomics using drift tube ion mobility-quadrupole resolved all ions time-of-flight mass spectrometry (IM-QRAI-TOFMS).

ANAL CHIM ACTA. 2021; 1163, 338508 WoS PubMed FullText FullText_BOKU

** Fuehrer, J; Pichler, KM; Fischer, A; Giurea, A; Weinmann, D; Altmann, F; Windhager, R; Gabius, HJ; Toegel, S N-Glycan profiling of chondrocytes and fibroblast-like synoviocytes: Towards functional glycomics in osteoarthritis.

PROTEOM CLIN APPL. 2021; 15(2-3), 2000057 WoS PubMed FullText FullText_BOKU

** Gabriel, R; Mueller, R; Floerl, L; Hopson, C; Harth, S; Schuerg, T; Fleissner, A; Singer, SW CAZymes from the thermophilic fungus Thermoascus aurantiacus are induced by C5 and C6 sugars.

BIOTECHNOL BIOFUELS. 2021; 14(1), 169 WoS PubMed FullText FullText_BOKU

** Gasperini, M; Garcia-Cela, E; Sulyok, M; Medina, A; Magan, N Fungal diversity and metabolomic profiles in GM and isogenic non-GM maize cultivars from Brazil.

MYCOTOXIN RES. 2021; 37(1): 39-48. WoS PubMed FullText FullText_BOKU

** Gomez-Cabrero, D; Walter, S; Abugessaisa, I; Minambres-Herraiz, R; Palomares, LB; Butcher, L; Erusalimsky, JD; Garcia-Garcia, FJ; Carnicero, J; Hardman, TC; Mischak, H; Zurbig, P; Hackl, M; Grillari, J; Fiorillo, E; Cucca, F; Cesari, M; Carrie, I; Colpo, M; Bandinelli, S; Feart, C; Peres, K; Dartigues, JF; Helmer, C; Vina, J; Olaso, G; Garcia-Palmero, I; Martinez, JG; Jansen-Durr, P; Grune, T; Weber, D; Lippi, G; Bonaguri, C; Sinclair, AJ; Tegner, J; Rodriguez-Manas, L A robust machine learning framework to identify signatures for frailty: a nested case-control study in four aging European cohorts.

GEROSCIENCE. 2021; 43(3): 1317-1329. WoS PubMed FullText FullText_BOKU

** Harrison, SP; Cramer, W; Franklin, O; Prentice, IC; Wang, H; Brannstrom, A; de Boer, H; Dieckmann, U; Joshi, J; Keenan, TF; Lavergne, A; Manzoni, S; Mengoli, G; Morfopoulos, C; Penuelas, J; Pietsch, S; Rebel, KT; Ryu, Y; Smith, NG; Stocker, BD; Wright, IJ Eco-evolutionary optimality as a means to improve vegetation and land-surface models.

NEW PHYTOL. 2021; 231(6): 2125-2141. WoS PubMed FullText FullText_BOKU

** Ibrahim, N; Taleb, M; Heiss, AG; Kropf, M; Farag, MA GC-MS based metabolites profiling of nutrients and anti-nutrients in 10 Lathyrus seed genotypes: A prospect for phyto-equivalency and chemotaxonomy.

FOOD BIOSCI. 2021; 42, 101183 WoS FullText FullText_BOKU

** Jandric, Z; Tchaikovsky, A; Zitek, A; Causon, T; Stursa, V; Prohaska, T; Hann, S; Multivariate modelling techniques applied to metabolomic, elemental and isotopic fingerprints for the verification of regional geographical origin of Austrian carrots..

Food Chem. 2021; 338:127924 WoS PubMed FullText FullText_BOKU

** Landis, JB; Miller, CM; Broz, AK; Bennett, AA; Carrasquilla-Garcia, N; Cook, DR; Last, RL; Bedinger, PA; Moghe, GD; Migration through a Major Andean Ecogeographic Disruption as a Driver of Genetic and Phenotypic Diversity in a Wild Tomato Species..

Mol Biol Evol. 2021; 38(8):320-3219 WoS PubMed PUBMED Central FullText FullText_BOKU

** Lenart, J; Gere, A; Causon, T; Hann, S; Dernovics, M; Nemeth, O; Hegedus, A; Halasz, J LC-MS based metabolic fingerprinting of apricot pistils after self-compatible and self-incompatible pollinations.

PLANT MOL BIOL. 2021; 105(4-5): 435-447. WoS PubMed FullText FullText_BOKU

** Maghuly, F; Marzban, G; Editorial: Omics Technologies Toward Systems Biology..

Front Genet. 2021; 12:756847 WoS PubMed PUBMED Central FullText FullText_BOKU

** Michel, S; Wagner, C; Nosenko, T; Steiner, B; Samad-Zamini, M; Buerstmayr, M; Mayer, K; Buerstmayr, H Merging Genomics and Transcriptomics for Predicting Fusarium Head Blight Resistance in Wheat.

GENES-BASEL. 2021; 12(1), 114 WoS PubMed FullText FullText_BOKU

** Moser, CK; Ukowitz, C; Emerstorfer, F; Hein, W; Domig, KJ Identification of the microbiota in sugar extraction juices by sequencing-based techniques.

SUGAR IND. 2021; 146(6): 346-353. WoS FullText FullText_BOKU

** Neuzil-Bunesova, V; Lugli, GA; Modrackova, N; Vlkova, E; Bolechova, P; Burtscher, J; Longhi, G; Mancabelli, L; Killer, J; Domig, K; Ventura, M; Five novel bifidobacterial species isolated from faeces of primates in two Czech zoos: .

Int J Syst Evol Microbiol. 2021; 71(1): WoS PubMed FullText FullText_BOKU

** Ribitsch, I; Bileck, A; Aldoshin, AD; Kandula, MM; Mayer, RL; Egerbacher, M; Gabner, S; Auer, U; Gultekin, S; Huber, J; Kreil, DP; Gerner, C; Jenner, F Molecular Mechanisms of Fetal Tendon Regeneration Versus Adult Fibrous Repair.

INT J MOL SCI. 2021; 22(11), 5619 WoS PubMed FullText FullText_BOKU

** Santin, M; Ranieri, A; Hauser, MT; Miras-Moreno, B; Rocchetti, G; Lucini, L; Strid, A; Castagna, A The outer influences the inner: Postharvest UV-B irradiation modulates peach flesh metabolome although shielded by the skin.

FOOD CHEM. 2021; 338, 127782 WoS PubMed FullText FullText_BOKU

** Tesei, D; Chiang, AJ; Kalkum, M; Stajich, JE; Mohan, GBM; Sterflinger, K; Venkateswaran, K; Effects of Simulated Microgravity on the Proteome and Secretome of the Polyextremotolerant Black Fungus .

Front Genet. 2021; 12:638708 WoS PubMed PUBMED Central FullText FullText_BOKU

** Viaggi, D; Raggi, M; Villanueva, AJ; Kantelhardt, J Provision of public goods by agriculture and forestry: Economics, policy and the way ahead.

LAND USE POLICY. 2021; 107, 105273 WoS FullText FullText_BOKU

** Wagner, E; Fagerlund, A; Langsrud, S; Møretrø, T; Jensen, MR; Moen, B; Surveillance of Listeria monocytogenes: Early Detection, Population Dynamics, and Quasimetagenomic Sequencing during Selective Enrichment..

Appl Environ Microbiol. 2021; 87(24):e0177421 WoS PubMed PUBMED Central FullText FullText_BOKU

2020

** Ceranic, A; Bueschl, C; Doppler, M; Parich, A; Xu, KK; Lemmens, M; Buerstmayr, H; Schuhmacher, R Enhanced Metabolome Coverage and Evaluation of Matrix Effects by the Use of Experimental-Condition-Matched C-13-Labeled Biological Samples in Isotope-Assisted LC-HRMS Metabolomics.

METABOLITES. 2020; 10(11), 434 WoS PubMed FullText FullText_BOKU

** Ceranic, A; Doppler, M; Buschl, C; Parich, A; Xu, KK; Koutnik, A; Burstmayr, H; Lemmens, M; Schuhmacher, R Preparation of uniformly labelled C-13- and N-15-plants using customised growth chambers.

PLANT METHODS. 2020; 16(1), 46 WoS PubMed FullText FullText_BOKU

** Chovanova, K; Bohmer, M; Poljovka, A; Budis, J; Harichova, J; Szemes, T; Zamocky, M Parallel Molecular Evolution of Catalases and Superoxide Dismutases-Focus on Thermophilic Fungal Genomes.

ANTIOXIDANTS-BASEL. 2020; 9(11), 1047 WoS PubMed FullText FullText_BOKU

** Cicconardi, F; Krapf, P; D'Annessa, I; Gamisch, A; Wagner, HC; Nguyen, AD; Economo, EP; Mikheyev, AS; Guenard, B; Grabherr, R; Andesner, P; Wolfgang, A; Di Marino, D; Steiner, FM; Schlick-Steiner, BC Genomic Signature of Shifts in Selection in a Subalpine Ant and Its Physiological Adaptations.

MOL BIOL EVOL. 2020; 37(8): 2211-2227. WoS PubMed FullText FullText_BOKU

** Clough, Y; Kirchweger, S; Kantelhardt, J Field sizes and the future of farmland biodiversity in European landscapes.

CONSERV LETT. 2020; 13(6), e12752 WoS PubMed FullText FullText_BOKU

** Coleine, C; Masonjones, S; Sterflinger, K; Onofri, S; Selbmann, L; Stajich, JE; Peculiar genomic traits in the stress-adapted cryptoendolithic Antarctic fungus Friedmanniomyces endolithicus..

Fungal Biol. 2020; 124(5):458-467 WoS PubMed FullText FullText_BOKU

** Corretto, E; Antonielli, L; Sessitsch, A; Hofer, C; Puschenreiter, M; Widhalm, S; Swarnalakshmi, K; Brader, G Comparative Genomics ofMicrobacteriumSpecies to Reveal Diversity, Potential for Secondary Metabolites and Heavy Metal Resistance.

FRONT MICROBIOL. 2020; 11, 1869 WoS PubMed PUBMED Central FullText FullText_BOKU

** De Leoz, MLA; Duewer, DL; Fung, A; Liu, L; Yau, HK; Potter, O; Staples, GO; Furuki, K; Frenkel, R; Hu, Y; Sosic, Z; Zhang, P; Altmann, F; Gru Nwald-Grube, C; Shao, C; Zaia, J; Evers, W; Pengelley, S; Suckau, D; Wiechmann, A; Resemann, A; Jabs, W; Beck, A; Froehlich, JW; Huang, C; Li, Y; Liu, Y; Sun, S; Wang, Y; Seo, Y; An, HJ; Reichardt, NC; Ruiz, JE; Archer-Hartmann, S; Azadi, P; Bell, L; Lakos, Z; An, Y; Cipollo, JF; Pucic-Bakovic, M; Štambuk, J; Lauc, G; Li, X; Wang, PG; Bock, A; Hennig, R; Rapp, E; Creskey, M; Cyr, TD; Nakano, M; Sugiyama, T; Leung, PA; Link-Lenczowski, P; Jaworek, J; Yang, S; Zhang, H; Kelly, T; Klapoetke, S; Cao, R; Kim, JY; Lee, HK; Lee, JY; Yoo, JS; Kim, SR; Suh, SK; de Haan, N; Falck, D; Lageveen-Kammeijer, GSM; Wuhrer, M; Emery, RJ; Kozak, RP; Liew, LP; Royle, L; Urbanowicz, PA; Packer, NH; Song, X; Everest-Dass, A; Lattová, E; Cajic, S; Alagesan, K; Kolarich, D; Kasali, T; Lindo, V; Chen, Y; Goswami, K; Gau, B; Amunugama, R; Jones, R; Stroop, CJM; Kato, K; Yagi, H; Kondo, S; Yuen, CT; Harazono, A; Shi, X; Magnelli, PE; Kasper, BT; Mahal, L; Harvey, DJ; O"Flaherty, R; Rudd, PM; Saldova, R; Hecht, ES; Muddiman, DC; Kang, J; Bhoskar, P; Menard, D; Saati, A; Merle, C; Mast, S; Tep, S; Truong, J; Nishikaze, T; Sekiya, S; Shafer, A; Funaoka, S; Toyoda, M; de Vreugd, P; Caron, C; Pradhan, P; Tan, NC; Mechref, Y; Patil, S; Rohrer, JS; Chakrabarti, R; Dadke, D; Lahori, M; Zou, C; Cairo, C; Reiz, B; Whittal, RM; Lebrilla, CB; Wu, L; Guttman, A; Szigeti, M; Kremkow, BG; Lee, KH; Sihlbom, C; Adamczyk, B; Jin, C; Karlsson, NG; Örnros, J; Larson, G; Nilsson, J; Meyer, B; Wiegandt, A; Komatsu, E; Perreault, H; Bodnar, ED; Said, N; Francois, YN; Leize-Wagner, E; Maier, S; Zeck, A; Heck, AJR; Yang, Y; Haselberg, R; Yu, YQ; Alley, W; Leone, JW; Yuan, H; Stein, SE; NIST Interlaboratory Study on Glycosylation Analysis of Monoclonal Antibodies: Comparison of Results from Diverse Analytical Methods..

Mol Cell Proteomics. 2020; 19(1):11-30 WoS PubMed PUBMED Central FullText FullText_BOKU

** Dhiman, H; Campbell, M; Melcher, M; Smith, KD; Borth, N; Predicting favorable landing pads for targeted integrations in Chinese hamster ovary cell lines by learning stability characteristics from random transgene integrations..

Comput Struct Biotechnol J. 2020; 18:3632-3648 WoS PubMed PUBMED Central FullText FullText_BOKU

** Eckmair, B; Jin, CS; Karlsson, NG; Abed-Navandi, D; Wilson, IBH; Paschinger, K Glycosylation at an evolutionary nexus: the brittle star Ophiactis savignyi expresses both vertebrate and invertebrate N-glycomic features.

J BIOL CHEM. 2020; 295(10): 3173-3188. WoS PubMed FullText FullText_BOKU

** Ferreira, MS; Alves, PC; Callahan, CM; Giska, I; Farelo, L; Jenny, H; Mills, LS; Hackländer, K; Good, JM; Melo-Ferreira, J; Transcriptomic regulation of seasonal coat color change in hares..

Ecol Evol. 2020; 10(3):1180-1192 WoS PubMed PUBMED Central FullText FullText_BOKU

** Mattsson, BJ; Devries, JH; Dubovsky, JA; Semmens, D; Thogmartin, WE; Derbridge, JJ; Lopez-Hoffman, L Sources and dynamics of international funding for waterfowl conservation in the Prairie Pothole Region of North America.

WILDLIFE RES. 2020; 47(4): 279-295. WoS FullText FullText_BOKU

** Muchadeyi, FC; Ibeagha-Awemu, EM; Javaremi, AN; Reynoso, GAG; Mwacharo, JM; Rothschild, MF; Solkner, J Editorial: Why Livestock Genomics for Developing Countries Offers Opportunities for Success.

FRONT GENET. 2020; 11, 626 WoS PubMed FullText FullText_BOKU

** Oliver, M; Roca-Jimenez, M; Miro, M; Cocovi-Solberg, DJ In quest of effect directed analysis in the smart laboratory: Automated system for flow-through evaluation of membranotropic effects of emerging contaminants.

TALANTA. 2020; 209, 120600 WoS PubMed FullText FullText_BOKU

** Pacifico, C; Stauder, A; Reisinger, N; Schwartz-Zimmermann, HE; Zebeli, Q Distinct serum metabolomic signatures of multiparous and primiparous dairy cows switched from a moderate to high-grain diet during early lactation.

METABOLOMICS. 2020; 16(9), 96 WoS PubMed FullText FullText_BOKU

** Paschinger, K; Wilson, IBH; Anionic and zwitterionic moieties as widespread glycan modifications in non-vertebrates..

Glycoconj J. 2020; 37(1):27-40 WoS PubMed PUBMED Central FullText FullText_BOKU

** Roddy, AB; Theroux-Rancourt, G; Abbo, T; Benedetti, JW; Brodersen, CR; Castro, M; Castro, S; Gilbride, AB; Jensen, B; Jiang, GF; Perkins, JA; Perkins, SD; Loureiro, J; Syed, Z; Thompson, RA; Kuebbing, SE; Simonin, KA The Scaling of Genome Size and Cell Size Limits Maximum Rates of Photosynthesis with Implications for Ecological Strategies.

INT J PLANT SCI. 2020; 181(1): 75-87. WoS FullText FullText_BOKU

** Schiavinato, M; Marcet-Houben, M; Dohm, JC; Gabaldón, T; Himmelbauer, H; Parental origin of the allotetraploid tobacco Nicotiana benthamiana..

Plant J. 2020; 102(3):541-554 WoS PubMed FullText FullText_BOKU

** Schulze-Makuch, D; Haque, S; Beckles, D; Schmitt-Kopplin, P; Harir, M; Schneider, B; Stumpp, C; Wagner, D A chemical and microbial characterization of selected mud volcanoes in Trinidad reveals pathogens introduced by surface water and rain water.

SCI TOTAL ENVIRON. 2020; 707, 136087 WoS PubMed FullText FullText_BOKU

** Selbmann, L; Benkő, Z; Coleine, C; de Hoog, S; Donati, C; Druzhinina, I; Emri, T; Ettinger, CL; Gladfelter, AS; Gorbushina, AA; Grigoriev, IV; Grube, M; Gunde-Cimerman, N; Karányi, ZÁ; Kocsis, B; Kubressoian, T; Miklós, I; Miskei, M; Muggia, L; Northen, T; Novak-Babič, M; Pennacchio, C; Pfliegler, WP; Pòcsi, I; Prigione, V; Riquelme, M; Segata, N; Schumacher, J; Shelest, E; Sterflinger, K; Tesei, D; U"Ren, JM; Varese, GC; Vázquez-Campos, X; Vicente, VA; Souza, EM; Zalar, P; Walker, AK; Stajich, JE; Shed Light in the DaRk LineagES of the Fungal Tree of Life-STRES..

Life (Basel). 2020; 10(12): WoS PubMed FullText FullText_BOKU

** Vanbeselaere, J; Jin, CS; Eckmair, B; Wilson, IBH; Paschinger, K Sulfated and sialylated N-glycans in the echinoderm Holothuria atra reflect its marine habitat and phylogeny.

J BIOL CHEM. 2020; 295(10): 3159-3172. WoS PubMed FullText FullText_BOKU

** Wagner, E; Zaiser, A; Leitner, R; Quijada, NM; Pracser, N; Pietzka, A; Ruppitsch, W; Schmitz-Esser, S; Wagner, M; Rychli, K; Virulence characterization and comparative genomics of Listeria monocytogenes sequence type 155 strains..

BMC Genomics. 2020; 21(1):847 WoS PubMed PUBMED Central FullText FullText_BOKU

** Zwickl, NF; Stralis-Pavese, N; Schäffer, C; Dohm, JC; Himmelbauer, H; Comparative genome characterization of the periodontal pathogen Tannerella forsythia..

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2019

** Causon, TJ; Ivanova-Petropulos, V; Petrusheva, D; Bogeva, E; Hann, S Fingerprinting of traditionally produced red wines using liquid chromatography combined with drift tube ion mobility-mass spectrometry.

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** Causon, TJ; Si-Hung, L; Newton, K; Kurulugama, RT; Fjeldsted, J; Hann, S; Fundamental study of ion trapping and multiplexing using drift tube-ion mobility time-of-flight mass spectrometry for non-targeted metabolomics..

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** Chazarin, B; Storey, KB; Ziemianin, A; Chanon, S; Plumel, M; Chery, I; Durand, C; Evans, AL; Arnemo, JM; Zedrosser, A; Swenson, JE; Gauquelin-Koch, G; Simon, C; Blanc, S; Lefai, E; Bertile, F; Metabolic reprogramming involving glycolysis in the hibernating brown bear skeletal muscle..

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** Hausknost, D; Haas, W The Politics of Selection: Towards a Transformative Model of Environmental Innovation.

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** Hoenigsberger, M; Kopchinskiy, AG; Bueschl, C; Parich, A; Laciny, A; Zettel, H; Salim, KA; Lim, LBL; Druzhinina, IS; Schuhmacher, R Volatiles from the Mandibular Gland Reservoir Content of Colobopsis explodens Laciny and Zettel, 2018, Worker Ants (Hymenoptera: Formicidae).

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** Hykollari, A; Malzl, D; Stanton, R; Eckmair, B; Paschinger, K Tissue-specific glycosylation in the honeybee: Analysis of the N-glycomes of Apis mellifera larvae and venom.

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** Le, SH; Troyer, C; Causon, T; Hann, S Sensitive quantitative analysis of phosphorylated primary metabolites using selective metal oxide enrichment and GC- and IC- MS/MS.

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** Mairinger, T; Sanderson, J; Hann, S GC-QTOFMS with a low-energy electron ionization source for advancing isotopologue analysis in C-13-based metabolic flux analysis.

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** Moreno, LF; Mayer, V; Voglmayr, H; Blatrix, R; Stielow, JB; Teixeira, MM; Vicente, VA; de Hoog, S Genomic analysis of ant domatia-associated melanized fungi (Chaetothyriales, Ascomycota).

MYCOL PROG. 2019; 18(4): 541-552. WoS FullText FullText_BOKU

** Paschinger, K; Wilson, IBH; Comparisons of N-glycans across invertebrate phyla..

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** Pinar, G; Poyntner, C; Tafel, H; Sterflinger, K A time travel story: metagenomic analyses decipher the unknown geographical shift and the storage history of possibly smuggled antique marble statues.

ANN MICROBIOL. 2019; 69(10): 1001-1021. WoS FullText FullText_BOKU

** Praeg, N; Pauli, H; Illmer, P Microbial Diversity in Bulk and Rhizosphere Soil of Ranunculus glacialis Along a High-Alpine Altitudinal Gradient.

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** Rampler, E; Egger, D; Schoeny, H; Rusz, M; Pacheco, MP; Marino, G; Kasper, C; Naegele, T; Koellensperger, G; The Power of LC-MS Based Multiomics: Exploring Adipogenic Differentiation of Human Mesenchymal Stem/Stromal Cells..

Molecules. 2019; 24(19): WoS PubMed FullText FullText_BOKU

** Rodríguez Del Río, Á; Minoche, AE; Zwickl, NF; Friedrich, A; Liedtke, S; Schmidt, T; Himmelbauer, H; Dohm, JC; Genomes of the wild beets Beta patula and Beta vulgaris ssp. maritima..

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** Samuel, R; Turner, B; Duangjai, S; Munzinger, J; Paun, O; Barfuss, MHJ; Chase, MW Systematics and evolution of the Old World Ebenaceae, a review with emphasis on the large genus Diospyros and its radiation in New Caledonia.

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** Schalamun, M; Nagar, R; Kainer, D; Beavan, E; Eccles, D; Rathjen, JP; Lanfear, R; Schwessinger, B Harnessing the MinION: An example of how to establish long-read sequencing in a laboratory using challenging plant tissue from Eucalyptus pauciflora.

MOL ECOL RESOUR. 2019; 19(1): 77-89. WoS PubMed FullText FullText_BOKU

** Stadler, D; Lambertini, F; Bueschl, C; Wiesenberger, G; Hametner, C; Schwartz-Zimmermann, H; Hellinger, R; Sulyok, M; Lemmens, M; Schuhmacher, R; Suman, M; Berthiller, F; Krska, R Untargeted LC-MS based C-13 labelling provides a full mass balance of deoxynivalenol and its degradation products formed during baking of crackers, biscuits and bread.

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** Tafer, H; Poyntner, C; Lopandic, K; Sterflinger, K; Piñar, G; Back to the Salt Mines: Genome and Transcriptome Comparisons of the Halophilic Fungus .

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** Yu, H; Hackenbroch, L; Meyer, FRL; Reiser, J; Razzazi-Fazeli, E; Nobauer, K; Besenfelder, U; Vogl, C; Brem, G; Mayrhofer, C Identification of Rabbit Oviductal Fluid Proteins Involved in Pre-Fertilization Processes by Quantitative Proteomics.

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2018

** Albrecht, S; Kaisermayer, C; Reinhart, D; Ambrose, M; Kunert, R; Lindeberg, A; Bones, J Multiple reaction monitoring targeted LC-MS analysis of potential cell death marker proteins for increased bioprocess control.

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** Curto, M; Schachtler, C; Puppo, P; Meimberg, H; Using a new RAD-sequencing approach to study the evolution of Micromeria in the Canary islands..

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** Darnhofer, I Using Comic-Style Posters for Engaging Participants and for Promoting Researcher Reflexivity.

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** D"Atri, V; Causon, T; Hernandez-Alba, O; Mutabazi, A; Veuthey, JL; Cianferani, S; Guillarme, D; Adding a new separation dimension to MS and LC-MS: What is the utility of ion mobility spectrometry?.

J Sep Sci. 2018; 41(1):20-67 WoS PubMed FullText FullText_BOKU

** Dethloff, F; Bueschl, C; Heumann, H; Schuhmacher, R; Turck, CW Partially C-13-labeled mouse tissue as reference for LC-MS based untargeted metabolomics.

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** Endo, A; Maeno, S; Tanizawa, Y; Kneifel, W; Arita, M; Dicks, L; Salminen, S; Fructophilic Lactic Acid Bacteria, a Unique Group of Fructose-Fermenting Microbes..

Appl Environ Microbiol. 2018; 84(19): WoS PubMed FullText FullText_BOKU

** Hoenigsberger, M; Kopchinskiy, AG; Parich, A; Hiller, K; Laciny, A; Zettel, H; Lim, LBL; Salim, KA; Druzhinina, IS; Schuhmacher, R Isolation of Mandibular Gland Reservoir Contents from Bornean 'Exploding Ants' (Formicidae) for Volatilome Analysis by GC-MS and MetaboliteDetector.

JOVE-J VIS EXP. 2018; (138): WoS PubMed FullText FullText_BOKU

** Leslie, JF; Lattanzio, V; Audenaert, K; Battilani, P; Cary, J; Chulze, SN; De Saeger, S; Gerardino, A; Karlovsky, P; Liao, YC; Maragos, CM; Meca, G; Medina, A; Moretti, A; Munkvold, G; Mule, G; Njobeh, P; Pecorelli, I; Perrone, G; Pietri, A; Palazzini, JM; Proctor, RH; Rahayu, ES; Ramirez, ML; Samson, R; Stroka, J; Sulyok, M; Sumarah, M; Waalwijk, C; Zhang, Q; Zhang, H; Logrieco, AF MycoKey Round Table Discussions of Future Directions in Research on Chemical Detection Methods, Genetics and Biodiversity of Mycotoxins.

TOXINS. 2018; 10(3): WoS PubMed FullText FullText_BOKU

** Malachova, A; Stranska, M; Vaclavikova, M; Elliott, CT; Black, C; Meneely, J; Hajlova, J; Ezekiel, CN; Schuhmacher, R; Krska, R Advanced LC-MS-based methods to study the co-occurrence and metabolization of multiple mycotoxins in cereals and cereal-based food.

ANAL BIOANAL CHEM. 2018; 410(3): 801-825. WoS PubMed FullText FullText_BOKU

** Mattsson, BJ; Dubovsky, JA; Thogmartin, WE; Bagstad, KJ; Goldstein, JH; Loomis, JB; Diffendorfer, JE; Semmens, DJ; Wiederholt, R; Lopez-Hoffman, L Recreation economics to inform migratory species conservation: Case study of the northern pintail.

J ENVIRON MANAGE. 2018; 206: 971-979. WoS PubMed FullText FullText_BOKU

** Moravcikova, N; Simcic, M; Meszaros, G; Solkner, J; Kukuckova, V; Vlcek, M; Trakovicka, A; Kadlecik, O; Kasarda, R Genomic Response to Natural Selection within Alpine Cattle Breeds.

CZECH J ANIM SCI. 2018; 63(4): 136-143. WoS FullText FullText_BOKU

** Porodko, A; Cirnski, A; Petrov, D; Raab, T; Paireder, M; Mayer, B; Maresch, D; Nika, L; Biniossek, ML; Gallois, P; Schilling, O; Oostenbrink, C; Novinec, M; Mach, L The two cathepsin B-like proteases of Arabidopsis thaliana are closely related enzymes with discrete endopeptidase and carboxydipeptidase activities.

BIOL CHEM. 2018; 399(10): 1223-1235. WoS PubMed FullText FullText_BOKU

** Roustan, V; Roustan, PJ; Weidinger, M; Reipert, S; Kapusi, E; Shabrangy, A; Stoger, E; Weckwerth, W; Ibl, V Microscopic and Proteomic Analysis of Dissected Developing Barley Endosperm Layers Reveals the Starchy Endosperm as Prominent Storage Tissue for ER-Derived Hordeins Alongside the Accumulation of Barley Protein Disulfide Isomerase (HvPDIL1-1).

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** Santin, M; Lucini, L; Castagna, A; Chiodelli, G; Hauser, MT; Ranieri, A Post-harvest UV-B radiation modulates metabolite profile in peach fruit.

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** Sarkanj, B; Ezekiel, CN; Turner, PC; Abia, WA; Rychlik, M; Krska, R; Sulyok, M; Warth, B Ultra-sensitive, stable isotope assisted quantification of multiple urinary mycotoxin exposure biomarkers.

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** Sauerschnig, C; Doppler, M; Bueschl, C; Schuhmacher, R Methanol Generates Numerous Artifacts during Sample Extraction and Storage of Extracts in Metabolomics Research.

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** Shabrangy, A; Roustan, V; Reipert, S; Weidinger, M; Roustan, PJ; Stoger, E; Weckwerth, W; Ibl, V Using RT-qPCR, Proteomics, and Microscopy to Unravel the Spatio-Temporal Expression and Subcellular Localization of Hordoindolines Across Development in Barley Endosperm.

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** Yan, S; Wang, H; Schachter, H; Jin, CS; Wilson, IBH; Paschinger, K Ablation of N-acetylglucosaminyltransferases in Caenorhabditis induces expression of unusual intersected and bisected N-glycans.

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2017

** Burgard, J; Valli, M; Graf, AB; Gasser, B; Mattanovich, D Biomarkers allow detection of nutrient limitations and respective supplementation for elimination in Pichia pastoris fed-batch cultures.

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** Corretto, E; Antonielli, L; Sessitsch, A; Compant, S; Höfer, C; Puschenreiter, M; Brader, G; Complete genome sequence of the heavy metal resistant bacterium Agromyces aureus AR33(T) and comparison with related Actinobacteria..

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** Curik, I; Ferencakovic, M; Solkner, J Genomic dissection of inbreeding depression: a gate to new opportunities.

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** de Vries, RP; Riley, R; Wiebenga, A; Aguilar-Osorio, G; Amillis, S; Uchima, CA; Anderluh, G; Asadollahi, M; Askin, M; Barry, K; Battaglia, E; Bayram, Ö; Benocci, T; Braus-Stromeyer, SA; Caldana, C; Cánovas, D; Cerqueira, GC; Chen, F; Chen, W; Choi, C; Clum, A; Dos Santos, RA; Damásio, AR; Diallinas, G; Emri, T; Fekete, E; Flipphi, M; Freyberg, S; Gallo, A; Gournas, C; Habgood, R; Hainaut, M; Harispe, ML; Henrissat, B; Hildén, KS; Hope, R; Hossain, A; Karabika, E; Karaffa, L; Karányi, Z; Kraševec, N; Kuo, A; Kusch, H; LaButti, K; Lagendijk, EL; Lapidus, A; Levasseur, A; Lindquist, E; Lipzen, A; Logrieco, AF; MacCabe, A; Mäkelä, MR; Malavazi, I; Melin, P; Meyer, V; Mielnichuk, N; Miskei, M; Molnár, ÁP; Mulé, G; Ngan, CY; Orejas, M; Orosz, E; Ouedraogo, JP; Overkamp, KM; Park, HS; Perrone, G; Piumi, F; Punt, PJ; Ram, AF; Ramón, A; Rauscher, S; Record, E; Riaño-Pachón, DM; Robert, V; Röhrig, J; Ruller, R; Salamov, A; Salih, NS; Samson, RA; Sándor, E; Sanguinetti, M; Schütze, T; Sepčić, K; Shelest, E; Sherlock, G; Sophianopoulou, V; Squina, FM; Sun, H; Susca, A; Todd, RB; Tsang, A; Unkles, SE; van de Wiele, N; van Rossen-Uffink, D; Oliveira, JV; Vesth, TC; Visser, J; Yu, JH; Zhou, M; Andersen, MR; Archer, DB; Baker, SE; Benoit, I; Brakhage, AA; Braus, GH; Fischer, R; Frisvad, JC; Goldman, GH; Houbraken, J; Oakley, B; Pócsi, I; Scazzocchio, C; Seiboth, B; vanKuyk, PA; Wortman, J; Dyer, PS; Grigoriev, IV; Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus..

Genome Biol. 2017; 18(1):28 WoS PubMed PUBMED Central FullText FullText_BOKU

** Grimplet, J; Tello, J; Laguna, N; Ibanez, J Differences in Flower Transcriptome between Grapevine Clones Are Related to Their Cluster Compactness, Fruitfulness, and Berry Size.

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** Grunwald-Gruber, C; Thader, A; Maresch, D; Dalik, T; Altmann, F Determination of true ratios of different N-glycan structures in electrospray ionization mass spectrometry.

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** Heinl, S; Grabherr, R Systems biology of robustness and flexibility: Lactobacillus buchneri-A show case.

J BIOTECHNOL. 2017; 257: 61-69. WoS PubMed FullText FullText_BOKU

** Hellinger, R; Thell, K; Vasileva, M; Muhammad, T; Gunasekera, S; Kummel, D; Goransson, U; Becker, CW; Gruber, CW Chemical Proteomics for Target Discovery of Head-to-Tail Cyclized Mini-Proteins.

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** Jiménez-Castells, C; Vanbeselaere, J; Kohlhuber, S; Ruttkowski, B; Joachim, A; Paschinger, K; Gender and developmental specific N-glycomes of the porcine parasite Oesophagostomum dentatum..

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** Kelly, PS; Clarke, C; Costello, A; Monger, C; Meiller, J; Dhiman, H; Borth, N; Betenbaugh, MJ; Clynes, M; Barron, N Ultra-deep next generation mitochondrial genome sequencing reveals widespread heteroplasmy in Chinese hamster ovary cells.

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** Kitzes, J; Berlow, E; Conlisk, E; Erb, K; Iha, K; Martinez, N; Newman, EA; Plutzar, C; Smith, AB; Harte, J Consumption-Based Conservation Targeting: Linking Biodiversity Loss to Upstream Demand through a Global Wildlife Footprint.

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** Mattanovich, M; Russmayer, H; Scharl-Hirsch, T; Puxbaum, V; Burgard, J; Mattanovich, D; Hann, S Metabolomics of Pichia pastoris: impact of buffering conditions on the kinetics and nature of metabolite loss during quenching.

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** Muller, CA; Perz, V; Christoph, PA; Quartinello, F; Guebitz, GM; Berg, G Discovery of Polyesterases from Moss-Associated Microorganisms.

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** Narzt, MS; Nagelreiter, IM; Bochkov, VN; Latreille, J; Sialana, F; Lubec, G; Fedorova, M; Ni, ZX; Filzwieser, M; Grillari, J; Beer, L; Tschachler, E; Gruber, F A "multi-omic" investigation of the effects of long wavelength ultraviolet light on primary human keratinocytes identifies NUPR1 as central stress response mediator.
[OCC World Congress / Annual SFRR-E Conference, Berlin, Germany, 21.06.2017 - 23.06.2017]

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** Nobauer, K; Hummel, K; Mayrhofer, C; Ahrens, M; Setyabudi, FMC; Schmidt-Heydt, M; Eisenacher, M; Razzazi-Fazeli, E Comprehensive proteomic analysis of Penicillium verrucosum.

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** Paireder, M; Tholen, S; Porodko, A; Biniossek, ML; Mayer, B; Novinec, M; Schilling, O; Mach, L The papain-like cysteine proteinases NbCysP6 and NbCysP7 are highly processive enzymes with substrate specificities complementary to Nicotiana benthamiana cathepsin B.

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** Remenar, M; Harichova, J; Zamocky, M; Pangallo, D; Szemes, T; Budis, J; Soltys, K; Ferianc, P Metagenomics of a nickel-resistant bacterial community in an anthropogenic nickel-contaminated soil in southwest Slovakia.

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** Rischbeck, P; Cardellach, P; Mistele, B; Schmidhalter, U Thermal phenotyping of stomatal sensitivity in spring barley.

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** Samad-Zamini, M; Schweiger, W; Nussbaumer, T; Mayer, KFX; Buerstmayr, H Time-course expression QTL-atlas of the global transcriptional response of wheat to Fusarium graminearum.

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** Sekot, W Forest Accountancy Data Networks as a Means for Investigating Small-Scale Forestry: A European Perspective.

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** Sistani, NR; Kaul, HP; Desalegn, G; Wienkoop, S Rhizobium Impacts on Seed Productivity, Quality, and Protection of Pisum sativum upon Disease Stress Caused by Didymella pinodes: Phenotypic, Proteomic, and Metabolomic Traits.

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** Steuer, B Is China's regulatory system on urban household waste collection effective? An evidence-based analysis on the evolution of formal rules and contravening informal practices.

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** Steuer, B; Ramusch, R; Part, F; Salhofer, S Analysis of the value chain and network structure of informal waste recycling in Beijing, China.

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** Teixeira, MM; Moreno, LF; Stielow, BJ; Muszewska, A; Hainaut, M; Gonzaga, L; Abouelleil, A; Patane, JSL; Priest, M; Souza, R; Young, S; Ferreira, KS; Zeng, Q; da Cunha, MML; Gladki, A; Barker, B; Vicente, VA; de Souza, EM; Almeida, S; Henrissat, B; Vasconcelos, ATR; Deng, S; Voglmayr, H; Moussa, TAA; Gorbushina, A; Felipe, MSS; Cuomo, CA; de Hoog, GS Exploring the genomic diversity of black yeasts and relatives (Chaetothyriales, Ascomycota).

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** Turetschek, R; Desalegn, G; Epple, T; Kaul, HP; Wienkoop, S Key metabolic traits of Pisum sativum maintain cell vitality during Didymella pinodes infection: cultivar resistance and the microsymbionts' influence.

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** Wallace, PW; Haernvall, K; Ribitsch, D; Zitzenbacher, S; Schittmayer, M; Steinkellner, G; Gruber, K; Guebitz, GM; Birner-Gruenberger, R; PpEst is a novel PBAT degrading polyesterase identified by proteomic screening of Pseudomonas pseudoalcaligenes..

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** Watanabe, D; Adányi, N; Takács, K; Maczó, A; Nagy, A; Gelencsér, É; Pachner, M; Lauter, K; Baumgartner, S; Vollmann, J; Development of soybeans with low P34 allergen protein concentration for reduced allergenicity of soy foods..

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2016

** Doppler, M; Kluger, B; Bueschl, C; Schneider, C; Krska, R; Delcambre, S; Hiller, K; Lemmens, M; Schuhmacher, R; Stable Isotope-Assisted Evaluation of Different Extraction Solvents for Untargeted Metabolomics of Plants..

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** Erusalimsky, JD; Grillari, J; Grune, T; Jansen-Duerr, P; Lippi, G; Sinclair, AJ; Tegner, J; Vina, J; Durrance-Bagale, A; Minambres, R; Viegas, M; Rodriguez-Manas, L In Search of 'Omics'-Based Biomarkers to Predict Risk of Frailty and Its Consequences in Older Individuals: The FRAILOMIC Initiative.

GERONTOLOGY, 62, 182-190; ISSN 0304-324X WoS PubMed FullText FullText_BOKU

** Farag, MA; Rasheed, DM; Kropf, M; Heiss, AG Metabolite profiling in Trigonella seeds via UPLC-MS and GC-MS analyzed using multivariate data analyses.

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** Gerstl, MP; Jungreuthmayer, C; Muller, S; Zanghellini, J Which sets of elementary flux modes form thermodynamically feasible flux distributions?.

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** Janesch, B; Schirmeister, F; Maresch, D; Altmann, F; Messner, P; Kolarich, D; Schäffer, C; Flagellin glycosylation in Paenibacillus alvei CCM 2051T..

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** Keiblinger, KM; Fuchs, S; Zechmeister-Boltenstern, S; Riedel, K; Soil and leaf litter metaproteomics-a brief guideline from sampling to understanding..

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** Koehbach, J; Gruber, CW; Becker, C; Kreil, DP; Jilek, A MALDI TOF/TOF-Based Approach for the Identification of D- Amino Acids in Biologically Active Peptides and Proteins.

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** Maresch, D; Altmann, F Isotype-specific glycosylation analysis of mouse IgG by LC-MS.

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** Meimberg, H; Schachtler, C; Curto, M; Husemann, M; Habel, JC A new amplicon based approach of whole mitogenome sequencing for phylogenetic and phylogeographic analysis: An example of East African white-eyes (Aves, Zosteropidae).

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** Meng-Reiterer, J; Bueschl, C; Rechthaler, J; Berthiller, F; Lemmens, M; Schuhmacher, R; Metabolism of HT-2 Toxin and T-2 Toxin in Oats..

Toxins (Basel). 2016; 8(12): WoS PubMed PUBMED Central FullText FullText_BOKU

** Ortmayr, K; Causon, TJ; Hann, S; Koellensperger, G Increasing selectivity and coverage in LC-MS based metabolome analysis.

TRAC-TREND ANAL CHEM. 2016; 82: 358-366. WoS FullText FullText_BOKU

** Paireder, M; Mehofer, U; Tholen, S; Porodko, A; Schahs, P; Maresch, D; Biniossek, ML; van der Hoorn, RAL; Lenarcic, B; Novinec, M; Schilling, O; Mach, L The death enzyme CP14 is a unique papain-like cysteine proteinase with a pronounced S2 subsite selectivity.

ARCH BIOCHEM BIOPHYS. 2016; 603: 110-117. WoS PubMed FullText FullText_BOKU

** Paschinger, K; Wilson, IB; Analysis of zwitterionic and anionic N-linked glycans from invertebrates and protists by mass spectrometry..

Glycoconj J. 2016; 33(3):273-283 WoS PubMed PUBMED Central FullText FullText_BOKU

** Rischbeck, P; Elsayed, S; Mistele, B; Barmeier, G; Heil, K; Schmidhalter, U Data fusion of spectral, thermal and canopy height parameters for improved yield prediction of drought stressed spring barley.

EUR J AGRON. 2016; 78: 44-59. WoS FullText FullText_BOKU

** Valli, M; Tatto, NE; Peymann, A; Gruber, C; Landes, N; Ekker, H; Thallinger, GG; Mattanovich, D; Gasser, B; Graf, AB; Curation of the genome annotation of Pichia pastoris (Komagataella phaffii) CBS7435 from gene level to protein function..

FEMS Yeast Res. 2016; 16(6): WoS PubMed FullText FullText_BOKU

2015

** Aranjuelo, I; Erice, G; Sanz-Saez, A; Abadie, C; Gilard, F; Gil-Quintana, E; Avice, JC; Staudinger, C; Wienkoop, S; Araus, JL; Bourguignon, J; Irigoyen, JJ; Tcherkez, G Differential CO2 effect on primary carbon metabolism of flag leaves in durum wheat (Triticum durum Desf.).

PLANT CELL ENVIRON. 2015; 38(12): 2780-2794. WoS PubMed FullText FullText_BOKU

** Causon, TJ; Hann, S Theoretical evaluation of peak capacity improvements by use of liquid chromatography combined with drift tube ion mobility-mass spectrometry.

J CHROMATOGR A. 2015; 1416: 47-56. WoS PubMed FullText FullText_BOKU

** Chassy, AW; Bueschl, C; Lee, H; Lerno, L; Oberholster, A; Barile, D; Schuhmacher, R; Waterhouse, AL; Tracing flavonoid degradation in grapes by MS filtering with stable isotopes..

Food Chem. 2015; 166:448-455 WoS PubMed FullText FullText_BOKU

** Griesser, M; Weingart, G; Schoedl-Hummel, K; Neumann, N; Becker, M; Varmuza, K; Liebner, F; Schuhmacher, R; Forneck, A; Severe drought stress is affecting selected primary metabolites, polyphenols, and volatile metabolites in grapevine leaves (Vitis vinifera cv. Pinot noir)..

Plant Physiol Biochem. 2015; 88:17-26 WoS PubMed FullText FullText_BOKU

** Kurz, S; Aoki, K; Jin, C; Karlsson, NG; Tiemeyer, M; Wilson, IB; Paschinger, K; Targeted release and fractionation reveal glucuronylated and sulphated N- and O-glycans in larvae of dipteran insects..

J Proteomics. 2015; 126:172-188 WoS PubMed PUBMED Central FullText FullText_BOKU

** Lebuhn, M; Weiss, S; Munk, B; Guebitz, GM Microbiology and Molecular Biology Tools for Biogas Process Analysis, Diagnosis and Control.

ADV BIOCHEM ENG BIOT. 2015; 151: 1-40. WoS PubMed FullText FullText_BOKU

** Nathanail, AV; Varga, E; Meng-Reiterer, J; Bueschl, C; Michlmayr, H; Malachova, A; Fruhrnann, P; Jestoi, M; Peltonen, K; Adam, G; Lemmens, M; Schuhmacher, R; Berthiller, F Metabolism of the Fusarium Mycotoxins T-2 Toxin and HT-2 Toxin in Wheat.

J AGR FOOD CHEM. 2015; 63(35): 7862-7872. WoS PubMed FullText FullText_BOKU

** Russmayer, H; Troyer, C; Neubauer, S; Steiger, MG; Gasser, B; Hann, S; Koellensperger, G; Sauer, M; Mattanovich, D; Metabolomics sampling of Pichia pastoris revisited: rapid filtration prevents metabolite loss during quenching..

FEMS Yeast Res. 2015; 15(6): WoS PubMed FullText FullText_BOKU

** Tesei, D; Marzban, G; Marchetti-Deschmann, M; Tafer, H; Arcalis, E; Sterflinger, K; Proteome of tolerance fine-tuning in the human pathogen black yeast Exophiala dermatitidis..

J Proteomics. 2015; 128:39-57 WoS PubMed FullText FullText_BOKU

** Vollmann, J; Eynck, C; Camelina as a sustainable oilseed crop: contributions of plant breeding and genetic engineering..

Biotechnol J. 2015; 10(4):525-535 WoS PubMed FullText FullText_BOKU

** Warth, B; Parich, A; Bueschl, C; Schoefbeck, D; Neumann, NKN; Kluger, B; Schuster, K; Krska, R; Adam, G; Lemmens, M; Schuhmacher, R GC-MS based targeted metabolic profiling identifies changes in the wheat metabolome following deoxynivalenol treatment.

METABOLOMICS. 2015; 11(3): 722-738. WoS PubMed PUBMED Central FullText FullText_BOKU

** Yan, S; Jin, CS; Wilson, IBH; Paschinger, K Comparisons of Caenorhabditis Fucosyltransferase Mutants Reveal a Multiplicity of Isomeric N-Glycan Structures.

J PROTEOME RES. 2015; 14(12): 5291-5305. WoS PubMed FullText FullText_BOKU

2014

** Bort, JAH; Shanmukam, V; Pabst, M; Windwarder, M; Neumann, L; Alchalabi, A; Krebiehl, G; Koellensperger, G; Hann, S; Sonntag, D; Altmann, F; Heel, C; Borth, N Reduced quenching and extraction time for mammalian cells using filtration and syringe extraction.

J BIOTECHNOL. 2014; 182: 97-103. WoS PubMed PUBMED Central FullText FullText_BOKU

** Bueschl, C; Kluger, B; Lemmens, M; Adam, G; Wiesenberger, G; Maschietto, V; Marocco, A; Strauss, J; Bodi, S; Thallinger, GG; Krska, R; Schuhmacher, R A novel stable isotope labelling assisted workflow for improved untargeted LC-HRMS based metabolomics research.

METABOLOMICS. 2014; 10(4): 754-769. WoS PubMed PUBMED Central FullText FullText_BOKU

** Farag, MA; Gad, HA; Heiss, AG; Wessjohann, LA Metabolomics driven analysis of six Nigella species seeds via UPLC-qTOE-MS and GC-MS coupled to chemometrics.

FOOD CHEM. 2014; 151: 333-342. WoS PubMed FullText FullText_BOKU

** Hykollari, A; Dragosits, M; Rendić, D; Wilson, IB; Paschinger, K; N-glycomic profiling of a glucosidase II mutant of Dictyostelium discoideum by ""off-line"" liquid chromatography and mass spectrometry..

Electrophoresis. 2014; 35(15):2116-2129 WoS PubMed PUBMED Central FullText FullText_BOKU

** Nussbaumer, T; Kugler, KG; Schweiger, W; Bader, KC; Gundlach, H; Spannagl, M; Poursarebani, N; Pfeifer, M; Mayer, KFX chromoWIZ: a web tool to query and visualize chromosome-anchored genes from cereal and model genomes.

BMC PLANT BIOL. 2014; 14: WoS FullText FullText_BOKU

** Rischbeck, P; Baresel, P; Elsayed, S; Mistele, B; Schmidhalter, U Development of a diurnal dehydration index for spring barley phenotyping.

FUNCT PLANT BIOL. 2014; 41(12): 1249-1260. WoS FullText FullText_BOKU

** Silva, MVB; dos Santos, DJA; Boison, SA; Utsunomiya, ATH; Carmo, AS; Sonstegard, TS; Cole, JB; Van Tassell, CP The development of genomics applied to dairy breeding.

LIVEST SCI. 2014; 166: 66-75. WoS FullText FullText_BOKU

** Wielstra, B; Duijm, E; Lagler, P; Lammers, Y; Meilink, WRM; Ziermann, JM; Arntzen, JW Parallel tagged amplicon sequencing of transcriptome-based genetic markers for Triturus newts with the Ion Torrent next-generation sequencing platform.

MOL ECOL RESOUR. 2014; 14(5): 1080-1089. WoS FullText FullText_BOKU

2013

** Beloqui, A; Calvo, J; Serna, S; Yan, S; Wilson, IBH; Martin-Lomas, M; Reichardt, NC Analysis of Microarrays by MALDI-TOF MS.

ANGEW CHEM INT EDIT. 2013; 52(29): 7477-7481. WoS FullText FullText_BOKU

** Bueschl, C; Krska, R; Kluger, B; Schuhmacher, R; Isotopic labeling-assisted metabolomics using LC-MS..

Anal Bioanal Chem. 2013; 405(1):27-33 WoS PubMed PUBMED Central FullText FullText_BOKU

** Gasser, B; Prielhofer, R; Marx, H; Maurer, M; Nocon, J; Steiger, M; Puxbaum, V; Sauer, M; Mattanovich, D; Pichia pastoris: protein production host and model organism for biomedical research..

Future Microbiol. 2013; 8(2):191-208 WoS PubMed FullText FullText_BOKU

** Guerrasio, R; Haberhauer-Troyer, C; Steiger, M; Sauer, M; Mattanovich, D; Koellensperger, G; Hann, S Measurement uncertainty of isotopologue fractions in fluxomics determined via mass spectrometry..

Anal Bioanal Chem. 2013; 405(15):5133-5146 WoS PubMed FullText FullText_BOKU

** Kant, S; Wang, S; Deegen, P; Hostettler, M; von Detten, R; Howard, T; Laband, D; Montgomery, C; Robert, N; Sekot, W; Valatin, G; Zhang, DW New frontiers of forest economics.

FOREST POLICY ECON. 2013; 35: 1-8. WoS FullText FullText_BOKU

** Klavins, K; Neubauer, S; Al Chalabi, A; Sonntag, D; Haberhauer-Troyer, C; Russmayer, H; Sauer, M; Mattanovich, D; Hann, S; Koellensperger, G Interlaboratory comparison for quantitative primary metabolite profiling in Pichia pastoris..

Anal Bioanal Chem. 2013; 405(15):5159-5169 WoS PubMed FullText FullText_BOKU

** Penker, M; Enengel, B; Mann, C; Aznar, O Understanding Landscape Stewardship - Lessons to be Learned from Public Service Economics.

J AGR ECON. 2013; 64(1): 54-72. WoS FullText FullText_BOKU

2012

** Heinl, S; Wibberg, D; Eikmeyer, F; Szczepanowski, R; Blom, J; Linke, B; Goesmann, A; Grabherr, R; Schwab, H; Pühler, A; Schlüter, A; Insights into the completely annotated genome of Lactobacillus buchneri CD034, a strain isolated from stable grass silage..

J Biotechnol. 2012; 161(2):153-166 WoS PubMed FullText FullText_BOKU

** Hernández Bort, JA; Hackl, M; Höflmayer, H; Jadhav, V; Harreither, E; Kumar, N; Ernst, W; Grillari, J; Borth, N; Dynamic mRNA and miRNA profiling of CHO-K1 suspension cell cultures..

Biotechnol J. 2012; 7(4):500-515 WoS PubMed FullText FullText_BOKU

** Keiblinger, KM; Wilhartitz, IC; Schneider, T; Roschitzki, B; Schmid, E; Eberl, L; Riedel, K; Zechmeister-Boltenstern, S; Soil metaproteomics - Comparative evaluation of protein extraction protocols..

Soil Biol Biochem. 2012; 54(15-10):14-24 WoS PubMed PUBMED Central FullText FullText_BOKU

** Meleady, P; Hoffrogge, R; Henry, M; Rupp, O; Bort, JH; Clarke, C; Brinkrolf, K; Kelly, S; Müller, B; Doolan, P; Hackl, M; Beckmann, TF; Noll, T; Grillari, J; Barron, N; Pühler, A; Clynes, M; Borth, N Utilization and evaluation of CHO-specific sequence databases for mass spectrometry based proteomics..

Biotechnol Bioeng. 2012; 109(6):1386-1394 WoS PubMed FullText FullText_BOKU

** Navascues, J; Perez-Rontome, C; Sanchez, DH; Staudinger, C; Wienkoop, S; Rellan-Alvarez, R; Becana, M Oxidative stress is a consequence, not a cause, of aluminum toxicity in the forage legume Lotus corniculatus.

NEW PHYTOL. 2012; 193(3): 625-636. WoS PubMed FullText FullText_BOKU

** Schneider, T; Keiblinger, KM; Schmid, E; Sterflinger-Gleixner, K; Ellersdorfer, G; Roschitzki, B; Richter, A; Eberl, L; Zechmeister-Boltenstern, S; Riedel, K; Who is who in litter decomposition? Metaproteomics reveals major microbial players and their biogeochemical functions.. [Poster]

ISME J. 2012; 6(9):1749-1762 WoS PubMed PUBMED Central FullText FullText_BOKU

** Weingart, G; Kluger, B; Forneck, A; Krska, R; Schuhmacher, R Establishment and Application of a Metabolomics Workflow for Identification and Profiling of Volatiles from Leaves of Vitis vinifera by HS-SPME-GC-MS..

Phytochem Anal. 2012; 23(4):345-358 WoS PubMed FullText FullText_BOKU

** Wienkoop, S; Staudinger, C; Hoehenwarter, W; Weckwerth, W; Egelhofer, V ProMEX - a mass spectral reference database for plant proteomics.

FRONT PLANT SCI. 2012; 3, 125 WoS PubMed FullText FullText_BOKU

2011

** Fu, J; Mueller, H; de Castro, JV; Yu, C; Cavaco-Paulo, A; Guebitz, GM; Nyanhongo, GS Changes in the bacterial community structure and diversity during bamboo retting..

Biotechnol J. 2011; 6(10):1262-1271 WoS PubMed FullText FullText_BOKU

** Herrmann, R; Berg, E; Dabbert, S; Pochtrager, S; Salhofer, K Going Beyond Impact Factors: A Survey-based Journal Ranking by Agricultural Economists.

J AGR ECON. 2011; 62(3): 710-732. WoS FullText FullText_BOKU

** Nikolic, B; Schwab, H; Sessitsch, A Metagenomic analysis of the 1-aminocyclopropane-1-carboxylate deaminase gene (acdS) operon of an uncultured bacterial endophyte colonizing Solanum tuberosum L.

ARCH MICROBIOL. 2011; 193(9): 665-676. WoS PubMed FullText FullText_BOKU

** Pabst, M; Altmann, F; Glycan analysis by modern instrumental methods..

Proteomics. 2011; 11(4):631-643 WoS PubMed FullText FullText_BOKU

** Schonhart, M; Schauppenlehner, T; Schmid, E; Muhar, A Integration of bio-physical and economic models to analyze management intensity and landscape structure effects at farm and landscape level.

AGR SYST. 2011; 104(2): 122-134. WoS FullText FullText_BOKU

2009

** König, S; Simianer, H; Willam, A Economic evaluation of genomic breeding programs..

J Dairy Sci. 2009; 92(1):382-391 WoS PubMed FullText FullText_BOKU

** Stadlmann, J; Weber, A; Pabst, M; Anderle, H; Kunert, R; Ehrlich, HJ; Peter Schwarz, H; Altmann, F; A close look at human IgG sialylation and subclass distribution after lectin fractionation..

Proteomics. 2009; 9(17):4143-4153 WoS PubMed FullText FullText_BOKU

2008

** Kolarich D, Weber A, Pabst M, Stadlmann J, Teschner W, Ehrlich H, Schwarz HP, Altmann F. Glycoproteomic characterization of butyrylcholinesterase from human plasma..

PROTEOMICS, 18, 254-263; ISSN 1615-9853 WoS FullText

** Marzban, G; Herndl, A; Maghuly, F; Katinger, H; Laimer, M; Mapping of fruit allergens by 2D electrophoresis and immunodetection..

Expert Rev Proteomics. 2008; 5(1):61-75 WoS PubMed FullText FullText_BOKU

** Stadlmann, J; Pabst, M; Kolarich, D; Kunert, R; Altmann, F; Analysis of immunoglobulin glycosylation by LC-ESI-MS of glycopeptides and oligosaccharides..

Proteomics. 2008; 8(14):2858-2871 WoS PubMed FullText FullText_BOKU

2006

** Kolarich D, Altmann F, Sunderasan E. Structural analysis of the glycoprotein allergen Hev b 4 from natural rubber latex by mass spectrometry.

BBA-GEN SUBJECTS, 1760(4), 715-720; ISSN 0304-4165 WoS FullText FullText_BOKU

** Kolarich, D; Weber, A; Turecek, PL; Schwarz, HP; Altmann, F; Comprehensive glyco-proteomic analysis of human alpha1-antitrypsin and its charge isoforms..

Proteomics. 2006; 6(11):3369-3380 WoS PubMed FullText FullText_BOKU

** Pollak, DD; John, J; Scharl, T; Leisch, F; Schneider, A; Hoeger, H; Lubec, G Strain-dependent regulation of neurotransmission and actin-remodelling proteins in the mouse hippocampus..

Genes Brain Behav. 2006; 5(2):200-204 WoS PubMed FullText FullText_BOKU

2005

** Leitsch, D; Radauer, C; Paschinger, K; Wilson, IB; Breiteneder, H; Scheiner, O; Duchêne, M Entamoeba histolytica: analysis of the trophozoite proteome by two-dimensional polyacrylamide gel electrophoresis..

Exp Parasitol. 2005; 110(3):191-195 WoS PubMed FullText FullText_BOKU

** Zellner, M; Winkler, W; Hayden, H; Diestinger, M; Eliasen, M; Gesslbauer, B; Miller, I; Chang, M; Kungl, A; Roth, E; Oehler, R Quantitative validation of different protein precipitation methods in proteome analysis of blood platelets..

Electrophoresis. 2005; 26(12):2481-2489 WoS PubMed FullText FullText_BOKU

2004

** Karp, NA; Kreil, DP; Lilley, KS Determining a significant change in protein expression with DeCyder during a pair-wise comparison using two-dimensional difference gel electrophoresis..

Proteomics. 2004; 4(5):1421-1432 WoS PubMed FullText FullText_BOKU

2003

** Bullock, DS; Salhofer, K Judging agricultural policies: a survey.

AGR ECON. 2003; 28(3): 225-243. WoS FullText FullText_BOKU

2002

** Rametsteiner, E. The role of governments in forest certification a normative analysis based on new institutional economicstheories.

Forest Policy and Economics, 4, 3, 163-173 WoS

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