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Search Items: Transcriptome, . hits: 22


** = Publications listed in SCI/SSCI - Journals (published in Web of Science)
* = peer-reviewed publication (not listed in SCI/SSCI)
Only: Full paper/article, Review, Proceedings Paper

2023

** Deshpande, D; Chhugani, K; Chang, YT; Karlsberg, A; Loeffler, C; Zhang, JY; Muszynska, A; Munteanu, V; Yang, H; Rotman, J; Tao, LR; Balliu, B; Tseng, E; Eskin, E; Zhao, FQ; Mohammadi, P; Labaj, PP; Mangul, S RNA-seq data science: From raw data to effective interpretation.

FRONT GENET. 2023; 14, 997383 WoS PubMed FullText FullText_BOKU

** Timofeyenko, K; Kanavalau, D; Alexiou, P; Kalyna, M; Ruzicka, K CATSNAP: a user-friendly algorithm for determining the conservation of protein variants reveals extensive parallelisms in the evolution of alternative splicing.

NEW PHYTOL. 2023; 238(4): 1722-1732. WoS PubMed FullText FullText_BOKU

2022

** Romanov, MN; Sölkner, J; Zinovieva, NA; Wimmers, K; Weigend, S; Editorial: Traditional and up-to-date genomic insights into domestic animal diversity..

Front Genet. 2022; 13:1117708 WoS PubMed PUBMED Central FullText FullText_BOKU

** Wagner, A; Schosserer, M; The epitranscriptome in ageing and stress resistance: A systematic review..

Ageing Res Rev. 2022; 81:101700 WoS PubMed FullText FullText_BOKU

2021

** Weinguny, M; Klanert, G; Eisenhut, P; Lee, I; Timp, W; Borth, N Subcloning induces changes in the DNA-methylation pattern of outgrowing Chinese hamster ovary cell colonies.

BIOTECHNOL J. 2021; 16(6), e2000350 WoS PubMed FullText FullText_BOKU

2020

** Domka, A; Rozpadek, P; Wazny, R; Jedrzejczyk, RJ; Hubalewska-Mazgaj, M; Gonnelli, C; Benny, J; Martinelli, F; Puschenreiter, M; Turnau, K Transcriptome Response of Metallicolous and a Non-Metallicolous Ecotypes of Noccaea goesingensis to Nickel Excess.

PLANTS-BASEL. 2020; 9(8), 951 WoS PubMed FullText FullText_BOKU

** Gutzat, R; Rembart, K; Nussbaumer, T; Hofmann, F; Pisupati, R; Bradamante, G; Daubel, N; Gaidora, A; Lettner, N; Dona, M; Nordborg, M; Nodine, M; Scheid, OM Arabidopsisshoot stem cells display dynamic transcription andDNAmethylation patterns.

EMBO J. 2020; 39(20), e103667 WoS PubMed FullText FullText_BOKU

2019

** Hernandez, I; Dhiman, H; Klanert, G; Jadhav, V; Auer, N; Hanscho, M; Baumann, M; Esteve-Codina, A; Dabad, M; Gómez, J; Alioto, T; Merkel, A; Raineri, E; Heath, S; Rico, D; Borth, N; Epigenetic regulation of gene expression in Chinese Hamster Ovary cells in response to the changing environment of a batch culture..

Biotechnol Bioeng. 2019; 116(3):677-692 WoS PubMed PUBMED Central FullText FullText_BOKU

** Ji, XJ; Tong, WD; Ning, BT; Mason, CE; Kreil, DP; Labaj, PP; Chen, G; Shi, TL QuaPra: Efficient transcript assembly and quantification using quadratic programming with Apriori algorithm.

SCI CHINA LIFE SCI. 2019; 62(7): 937-946. WoS PubMed FullText FullText_BOKU

** Xu, CQ; Liu, H; Zhou, SS; Zhang, DX; Zhao, W; Wang, SH; Chen, F; Sun, YQ; Nie, S; Jia, KH; Jiao, SQ; Zhang, RG; Yun, QZ; Guan, WB; Wang, XW; Gao, Q; Bennetzen, JL; Maghuly, F; Porth, I; Van de Peer, Y; Wang, XR; Ma, YP; Mao, JF Genome sequence of Malania oleifera, a tree with great value for nervonic acid production.

GIGASCIENCE. 2019; 8(2), giy164 WoS PubMed FullText FullText_BOKU

** Zwirzitz, B; Pinior, B; Metzler-Zebeli, B; Handler, M; Gense, K; Knecht, C; Ladinig, A; Dzieciol, M; Wetzels, SU; Wagner, M; Schmitz-Esser, S; Mann, E; Microbiota of the Gut-Lymph Node Axis: Depletion of Mucosa-Associated Segmented Filamentous Bacteria and Enrichment of .

Front Microbiol. 2019; 10:599 WoS PubMed PUBMED Central FullText FullText_BOKU

2018

** Koczka, K; Peters, P; Ernst, W; Himmelbauer, H; Nika, L; Grabherr, R Comparative transcriptome analysis of a Trichoplusia ni cell line reveals distinct host responses to intracellular and secreted protein products expressed by recombinant baculoviruses.

J BIOTECHNOL. 2018; 270: 61-69. WoS PubMed FullText FullText_BOKU

** Reinhart, D; Damjanovic, L; Castan, A; Ernst, W; Kunert, R Differential gene expression of a feed-spiked super-producing CHO cell line.

J BIOTECHNOL. 2018; 285: 23-37. WoS PubMed FullText FullText_BOKU

2017

** Shridhar, S; Klanert, G; Auer, N; Hernandez-Lopez, I; Kandula, MM; Hackl, M; Grillari, J; Stralis-Pavese, N; Kreil, DP; Borth, N Transcriptomic changes in CHO cells after adaptation to suspension growth in protein-free medium analysed by a species-specific microarray.

J BIOTECHNOL. 2017; 257: 13-21. WoS PubMed FullText FullText_BOKU

2016

** Vlasova, A; Capella-Gutiérrez, S; Rendón-Anaya, M; Hernández-Oñate, M; Minoche, AE; Erb, I; Câmara, F; Prieto-Barja, P; Corvelo, A; Sanseverino, W; Westergaard, G; Dohm, JC; Pappas, GJ; Saburido-Alvarez, S; Kedra, D; Gonzalez, I; Cozzuto, L; Gómez-Garrido, J; Aguilar-Morón, MA; Andreu, N; Aguilar, OM; Garcia-Mas, J; Zehnsdorf, M; Vázquez, MP; Delgado-Salinas, A; Delaye, L; Lowy, E; Mentaberry, A; Vianello-Brondani, RP; García, JL; Alioto, T; Sánchez, F; Himmelbauer, H; Santalla, M; Notredame, C; Gabaldón, T; Herrera-Estrella, A; Guigó, R; Genome and transcriptome analysis of the Mesoamerican common bean and the role of gene duplications in establishing tissue and temporal specialization of genes..

Genome Biol. 2016; 17:32 WoS PubMed PUBMED Central FullText FullText_BOKU

2015

** Ali, MA; Abbas, A; Azeem, F; Javed, N; Bohlmann, H Plant-nematode Interactions: From Genomics to Metabolomics.

INT J AGRIC BIOL. 2015; 17(6): 1071-1082. WoS

** Patalano, S; Vlasova, A; Wyatt, C; Ewels, P; Camara, F; Ferreira, PG; Asher, CL; Jurkowski, TP; Segonds-Pichon, A; Bachman, M; González-Navarrete, I; Minoche, AE; Krueger, F; Lowy, E; Marcet-Houben, M; Rodriguez-Ales, JL; Nascimento, FS; Balasubramanian, S; Gabaldon, T; Tarver, JE; Andrews, S; Himmelbauer, H; Hughes, WO; Guigó, R; Reik, W; Sumner, S; Molecular signatures of plastic phenotypes in two eusocial insect species with simple societies..

Proc Natl Acad Sci U S A. 2015; 112(45):13970-13975 WoS PubMed PUBMED Central FullText FullText_BOKU

** Prielhofer, R; Cartwright, SP; Graf, AB; Valli, M; Bill, RM; Mattanovich, D; Gasser, B; Pichia pastoris regulates its gene-specific response to different carbon sources at the transcriptional, rather than the translational, level..

BMC Genomics. 2015; 16:167 WoS PubMed PUBMED Central FullText FullText_BOKU

** Rußmayer, H; Buchetics, M; Gruber, C; Valli, M; Grillitsch, K; Modarres, G; Guerrasio, R; Klavins, K; Neubauer, S; Drexler, H; Steiger, M; Troyer, C; Al Chalabi, A; Krebiehl, G; Sonntag, D; Zellnig, G; Daum, G; Graf, AB; Altmann, F; Koellensperger, G; Hann, S; Sauer, M; Mattanovich, D; Gasser, B; Systems-level organization of yeast methylotrophic lifestyle..

BMC Biol. 2015; 13:80 WoS PubMed PUBMED Central FullText FullText_BOKU

2014

** Jiang, CY; Tholen, D; Xu, JM; Xin, CP; Zhang, H; Zhu, XG; Zhao, YX Increased expression of mitochondria-localized carbonic anhydrase activity resulted in an increased biomass accumulation in Arabidopsis thaliana.

J PLANT BIOL. 2014; 57(6): 366-374. WoS FullText FullText_BOKU

2013

** Kugler, KG; Siegwart, G; Nussbaumer, T; Ametz, C; Spannagl, M; Steiner, B; Lemmens, M; Mayer, KF; Buerstmayr, H; Schweiger, W; Quantitative trait loci-dependent analysis of a gene co-expression network associated with Fusarium head blight resistance in bread wheat (Triticum aestivum L.)..

BMC Genomics. 2013; 14:728 WoS PubMed PUBMED Central FullText FullText_BOKU

2009

** Szakasits, D; Heinen, P; Wieczorek, K; Hofmann, J; Wagner, F; Kreil, DP; Sykacek, P; Grundler, FMW; Bohlmann, H The transcriptome of syncytia induced by the cyst nematode Heterodera schachtii in Arabidopsis roots.

PLANT J. 2009; 57(5): 771-784. WoS PubMed PUBMED Central FullText FullText_BOKU

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