University of Natural Resources and Life Sciences, Vienna (BOKU) - Research portal

Logo BOKU Resarch Portal

Selected Publication:

Leroy, G; Danchin-Burge, C; Palhiere, I; Baumung, R; Fritz, S; Meriaux, JC; Gautier, M.
(2012): An ABC estimate of pedigree error rate: application in dog, sheep and cattle breeds
ANIM GENET. 2012; 43(3): 309-314. FullText FullText_BOKU

Abstract:
On the basis of correlations between pairwise individual genealogical kinship coefficients and allele sharing distances computed from genotyping data, we propose an approximate Bayesian computation (ABC) approach to assess pedigree file reliability through gene-dropping simulations. We explore the features of the method using simulated data sets and show precision increases with the number of markers. An application is further made with five dog breeds, four sheep breeds and one cattle breed raised in France and displaying various characteristics and population sizes, using microsatellite or SNP markers. Depending on the breeds, pedigree error estimations range between 1% and 9% in dog breeds, 1% and 10% in sheep breeds and 4% in cattle breeds.
Authors BOKU Wien:
Baumung Roswitha

Find related publications in this database (Keywords)
Approximate Bayesian Computation
cattle
dog
pedigree error
sheep


Altmetric:
© BOKU Wien Imprint