Biochemistry of heme Q
- Lebensmittel, Ernährung, Gesundheit
- Biotechnologie
Abstract
Recently, a novel heme b biosynthesis pathway has been detected in Gram-positive bacteria with the last step being catalysed by HemQ, an enzyme that is not found in human metabolism. Despite of its importance there is only little knowledge about its biochemistry and the mechanism of its action is completely unknown. Thus this basic research project focuses on the elucidation of structure-function relationships of HemQ. By applying a broad set of biochemical and biophysical techniques this interdisciplinary project aims at investigating four model proteins from different phylogenetic lineages in order to establish a general reaction mechanism. In detail we have selected three HemQs from important human pathogens, namely Listeria monocytogenes, Staphylococcus aureus and Corynebacterium diphteriae, thus including dangerous (antibiotics-resistant) and wide-spread hospital bugs. Additionally, HemQ from the Archaeum Sulfolobus sulfataricus will be investigated. The model proteins will be produced recombinantly, mutated and analysed in a comprehensive and comparative biochemical study including biospectroscopies, kinetic, thermodynamic and redox studies, X-ray crystallography and computational methods. Based on the obtained knowledge of action of HemQ at a molecular basis, it will be possible to rationally design inhibitors against HemQ in the future. Consequently, this study will later on allow to create a new class of antibiotics against these wide-spread pathogens. These bacteria are strongly dependent on the function of many heme-containing enzymes including those that are directly involved in host attack. Thus inhibition of heme biosynthesis will immediately block the viability of these pathogens.
Publications
Structure and heme-binding properties of HemQ (chlorite dismutase-like protein) from Listeria monocytogenes.
Autoren: Hofbauer, S; Hagmüller, A; Schaffner, I; Mlynek, G; Krutzler, M; Stadlmayr, G; Pirker, KF; Obinger, C; Daims, H; Djinović-Carugo, K; Furtmüller, PG; Jahr: 2015
Journal articles
From chlorite dismutase towards HemQ - the role of the proximal H-bonding network in haeme binding.
Autoren: Hofbauer, S; Howes, BD; Flego, N; Pirker, KF; Schaffner, I; Mlynek, G; Djinović-Carugo, K; Furtmüller, PG; Smulevich, G; Obinger, C; Jahr: 2016
Journal articles
Chemistry and Molecular Dynamics Simulations of Heme b-HemQ and Coproheme-HemQ.
Autoren: Hofbauer, S; Dalla Sega, M; Scheiblbrandner, S; Jandova, Z; Schaffner, I; Mlynek, G; Djinović-Carugo, K; Battistuzzi, G; Furtmüller, PG; Oostenbrink, C; Obinger, C; Jahr: 2016
Journal articles
Coproheme and HemQ
Autoren: Hofbauer, S., Scheiblbrandner, S., Schaffner, I., Djinović-Carugo, K., Battistuzzi, G., Furtmüller, P. G., Obinger, C. Jahr: 2016
Conference & Workshop proceedings, paper, abstract
external links and characteristics of the publication:Hydrogen peroxide-mediated conversion of coproheme to heme b by HemQ-lessons from the first crystal structure and kinetic studies.
Autoren: Hofbauer, S; Mlynek, G; Milazzo, L; Pühringer, D; Maresch, D; Schaffner, I; Furtmüller, PG; Smulevich, G; Djinović-Carugo, K; Obinger, C; Jahr: 2016
Journal articles
Coproheme decarboxylases - Phylogenetic prediction versus biochemical experiments.
Autoren: Pfanzagl, V; Holcik, L; Maresch, D; Gorgone, G; Michlits, H; Furtmüller, PG; Hofbauer, S; Jahr: 2018
Journal articles
Insights into the Active Site of Coproheme Decarboxylase from Listeria monocytogenes.
Autoren: Milazzo, L; Hofbauer, S; Howes, BD; Gabler, T; Furtmüller, PG; Obinger, C; Smulevich, G; Jahr: 2018
Journal articles
Coproheme Listeria monocytogenes HemQ and selected mutants to highlight the structure function
Autoren: Milazzo, L; Hofbauer, S; Howes, BD; Obinger, C; Smulevich, G Jahr: 2018
Conference & Workshop proceedings, paper, abstract
external links and characteristics of the publication:Mechanistic Studies on Coproheme Decarboxylase
Autoren: Hofbauer, S; Milazzo, L; Mlynek, G; Gabler, T; Howes, BD; Pfanzagl, V; Djinović-Carugo, K; Furtmüller, PG; Smulevich, G; Obinger, C Jahr: 2018
Conference & Workshop proceedings, paper, abstract
external links and characteristics of the publication:Coproheme decarboxylase from Listeria monocytogenes: insight into the active site structure
Autoren: Milazzo, L; Hofbauer, S; Howes, BD; Gabler, T; Furtmüller, PG; Obinger, C; Smulevich, G. Jahr: 2018
Conference & Workshop proceedings, paper, abstract
external links and characteristics of the publication:Coproheme decarboxylases – phylogenetic prediction versus biochemical analysis.
Autoren: Pfanzagl, V., Holcik, L., Maresch, D., Michlits, H., Furtmüller, P. G., Obinger, C., Hofbauer, S. Jahr: 2018
Conference & Workshop proceedings, paper, abstract
external links and characteristics of the publication:The hydrogen bonding network of coproheme in coproheme decarboxylase from Listeria monocytogenes: Effect on structure and catalysis.
Autoren: Milazzo, L; Gabler, T; Pfanzagl, V; Michlits, H; Furtmüller, PG; Obinger, C; Hofbauer, S; Smulevich, G; Jahr: 2019
Journal articles
Resonance Raman to understand the heme cavity impact on the structure and function of coproheme decarboxylase (ChdC) from Listeria monocytogenes
Autoren: Milazzo, L; Hofbauer, S; Gabler, T; Furtmüller, PG; Obinger, C; Smulevich, G Jahr: 2019
Conference & Workshop proceedings, paper, abstract
external links and characteristics of the publication:Molecular mechanism of coproheme to heme b conversion
Autoren: Hofbauer, S; Milazzo, L; Gabler, T; Pühringer, D; Pfanzagl, V; Djinovic-Carugo, K; Furtmüller, PG; Obinger, C; Smulevich, G Jahr: 2019
Conference & Workshop proceedings, paper, abstract
external links and characteristics of the publication:An actinobacterial representative sheds a new light on the reaction mechanism of coproheme decarboxylases
Autoren: Michlits, H; Pfanzagl, V; Furtmüller, PG; Djinovic-Carugo, K; Obinger, C; Hofbauer, S Jahr: 2019
Conference & Workshop proceedings, paper, abstract
external links and characteristics of the publication:Redox Cofactor Rotates during Its Stepwise Decarboxylation: Molecular Mechanism of Conversion of Coproheme to Heme
Autoren: Milazzo, L; Gabler, T; Pühringer, D; Jandova, Z; Maresch, D; Michlits, H; Pfanzagl, V; Djinović-Carugo, K; Oostenbrink, C; Furtmüller, PG; Obinger, C; Smulevich, G; Hofbauer, S; Jahr: 2019
Journal articles
Crystal structures and calorimetry reveal catalytically relevant binding mode of coproporphyrin and coproheme in coproporphyrin ferrochelatase.
Autoren: Hofbauer, S; Helm, J; Obinger, C; Djinović-Carugo, K; Furtmüller, PG; Jahr: 2020
Journal articles
Actinobacterial Coproheme Decarboxylases Use Histidine as a Distal Base to Promote Compound I Formation.
Autoren: Michlits, H; Lier, B; Pfanzagl, V; Djinović-Carugo, K; Furtmüller, PG; Oostenbrink, C; Obinger, C; Hofbauer, S; Jahr: 2020
Journal articles
X-ray-induced photoreduction of heme metal centers rapidly induces active-site perturbations in a protein-independent manner.
Autoren: Pfanzagl, V; Beale, JH; Michlits, H; Schmidt, D; Gabler, T; Obinger, C; Djinović-Carugo, K; Hofbauer, S; Jahr: 2020
Journal articles
Understanding molecular enzymology of porphyrin-binding α + β barrel proteins - One fold, multiple functions.
Autoren: Hofbauer, S; Pfanzagl, V; Michlits, H; Schmidt, D; Obinger, C; Furtmüller, PG; Jahr: 2021
Journal articles
Coproporphyrin ferrochelatase – study of relevant residues for substrate and product binding
Autoren: Gabler, T; Pfanzagl, V; Obinger, C; Furtmüller PG; Hofbauer, S Jahr: 2021
Conference & Workshop proceedings, paper, abstract
external links and characteristics of the publication:Reaction intermediate rotation during the decarboxylation of coproheme to heme b in C. diphtheriae.
Autoren: Sebastiani, F; Michlits, H; Lier, B; Becucci, M; Furtmüller, PG; Oostenbrink, C; Obinger, C; Hofbauer, S; Smulevich, G; Jahr: 2021
Journal articles
An active site at work - the role of key residues in C. diphteriae coproheme decarboxylase.
Autoren: Sebastiani, F; Risorti, R; Niccoli, C; Michlits, H; Becucci, M; Hofbauer, S; Smulevich, G; Jahr: 2022
Journal articles
Initial Steps to Engineer Coproheme Decarboxylase to Obtain Stereospecific Monovinyl, Monopropionyl Deuterohemes.
Autoren: Michlits, H; Valente, N; Mlynek, G; Hofbauer, S; Jahr: 2021
Journal articles
X-ray induced reduction of heme metal centers is protein-independent
Autoren: Pfanzagl, V; Beale, JH; Michlits, H; Schmidt, D; Gabler, T; Obinger, C; Djinovic-Carugo, K; Hofbauer, S; Jahr: 2022
Conference & Workshop proceedings, paper, abstract
external links and characteristics of the publication:
Project staff
Paul Georg Furtmüller
ao.Univ.Prof. Dipl.-Ing.Dr.nat.techn. Paul Georg Furtmüller
paul.furtmueller@boku.ac.at
Tel: +43 1 47654-77277
Project Leader
01.11.2016 - 02.11.2016
Stefan Hofbauer
Ass.Prof. Priv.-Doz. Dipl.-Ing. Stefan Hofbauer Ph.D.
stefan.hofbauer@boku.ac.at
Tel: +43 1 47654-77258
Project Leader
03.11.2016 - 31.10.2021